Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05189 ATGGCAAAGTATTTTATAGTTTCAAAAACCTTGATTATTCTACTATGTCTAATTAATAGTGTAGTGCACCCAATAGAAGCACTAACACAACCATGGTCATTATTAGATGCACCAAAAGATATCCTTCAAAACCTTATTCGTGACCCATTGAGCCTTTCACTAGCCTCAACCGATTTTGGTCACATAATTCACAAAAACCCCGTCGCAATTTTTGCACCATCTTCCACAAATGACATAACAAAATTGATAAAATTCTCAAATTCCCTTCCTATCCCTTTTACAATAGCTGCAAGAGGACAAGGACATTCAGTTAATGGACAATCCATGACAAATGATGGTGTTGTGTTGAACATGACTGAATTGAATAAAGGGATTGGAAATAATGGAAGTAGTAGAATTGTAGTGTTTGATAATTATGTAGATGTTGGTGGTGAACAAATTTGGATTGATGTTTTGCATGCAAGCCTTGAAAAAGGACTTACACCACTTTCTTGGACTGATTATTTGTATTTATCGGTTGGTGGAACTCTCTCTAATGCTGGTATTAGTGGACAAACCTTTCGATTTGGTCCTCAAATTTCCAATGTCCTTGAATTGGATGTTGTTACGGGGAAAGGAGATTTGGTGACTTGTTCAACGAAGAAGAACTCAGAATTATTTTATAGTGTTCTTGGAGGTTTAGGCCAATTTGGGATTATAACCCGGGCAAGAATAGCTCTAGCGCCAGCACCCAAGAGGGTAAAGTGGCTCCGTTTATTTTACAATGACTTCTCTACATTTTCTAGAGACCAAGAGCTTCTAATTTCACACAGTGGAATAAATGAAAATGCACCAAATTATGTAGAAGGAATGTTATTGTTAAATCAACCACCACTAGACCTATCCTTTTATCCAGAAATTGATCAACCTCGCATAACTTCCCTAGTAACCCAATTTGGCATCATCTACATCATTGAGCTTGTTAAATATTACGATGATAACTCTAAAGATCAAGTTGATCAGGAAATTGAAAATTTGATTCAAGGGTTAAATTTTATACCTACTTTTATGTTCGTAAAAGATACATCCTACGAAGAATTTCTAAATAGAGTCCATGTTGATGAGCTTGCACTAAGGACACAAGGACTTTGGGACATTCCTCATCCTTGGTTAAATATTTTTGTTCCAGGATCAAGAATCTCTGATTTTGATGAAGGTGTGTTCAAGGGTATTATCCTTAAACAAAATATTACTGCAGGACTTGCAATTGTCTACCCAATGAACCGAACAAAGTGGGATGATAATATGTCAGCAGTTACGCCTAATGAAGAAATTTTCTACATTGTGAGTCTTTTGCGTACAACTGGATTTGATAAATTGGAGGCATTTCAGGCTCAAAACCAACAAATATTACAATTTTGTATGGATGCTAGTATTGGGATTAAACAATATCTTCCATTAATCCAAACACATGAAGAATGGGTGGAACAATTTGGCCTCAAATGGAAAATTTTTGAGAAAAGAAAAGCTCAATTTGATCCGAATAAAATATTGTCACCTGGGCAAAGAATTTTCAATTAA 1560 0.3558 MAKYFIVSKTLIILLCLINSVVHPIEALTQPWSLLDAPKDILQNLIRDPLSLSLASTDFGHIIHKNPVAIFAPSSTNDITKLIKFSNSLPIPFTIAARGQGHSVNGQSMTNDGVVLNMTELNKGIGNNGSSRIVVFDNYVDVGGEQIWIDVLHASLEKGLTPLSWTDYLYLSVGGTLSNAGISGQTFRFGPQISNVLELDVVTGKGDLVTCSTKKNSELFYSVLGGLGQFGIITRARIALAPAPKRVKWLRLFYNDFSTFSRDQELLISHSGINENAPNYVEGMLLLNQPPLDLSFYPEIDQPRITSLVTQFGIIYIIELVKYYDDNSKDQVDQEIENLIQGLNFIPTFMFVKDTSYEEFLNRVHVDELALRTQGLWDIPHPWLNIFVPGSRISDFDEGVFKGIILKQNITAGLAIVYPMNRTKWDDNMSAVTPNEEIFYIVSLLRTTGFDKLEAFQAQNQQILQFCMDASIGIKQYLPLIQTHEEWVEQFGLKWKIFEKRKAQFDPNKILSPGQRIFN 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05189 519 Gene3D - 246 477 IPR016170 -
Trre15g05189 519 Gene3D - 50 518 IPR016167 -
Trre15g05189 519 ProSitePatterns Oxygen oxidoreductases covalent FAD-binding site. 67 102 IPR006093 GO:0016491
Trre15g05189 519 SUPERFAMILY FAD-linked oxidases, C-terminal domain 244 519 IPR016164 GO:0003824|GO:0050660
Trre15g05189 519 Gene3D - 118 245 IPR016169 -
Trre15g05189 519 SUPERFAMILY FAD-binding/transporter-associated domain-like 44 242 IPR036318 GO:0050660
Trre15g05189 519 ProSiteProfiles PCMH-type FAD-binding domain profile. 63 243 IPR016166 GO:0071949
Trre15g05189 519 PANTHER GULONOLACTONE OXIDASE 40 519 - -
Trre15g05189 519 Pfam FAD binding domain 68 212 IPR006094 GO:0050660
Trre15g05189 519 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 244 518 IPR015345 GO:0009690|GO:0019139|GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05189 Trre-Chr15 61370561 61376397 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05189 K00279 - gmx:100808553 775.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g05189 15 61370561 61376397 Trre15g05189 15 61370561 61376397 ECH
Trre15g05189 15 61370561 61376397 Trre3g02373 3 22554934 22561054 PCT