Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02327 ATGTATGAATATAGAGCTGCTAAGATTTTTATTTCTCAACAATTTATTGAGACTAATGAAGGGTCACACAAGGTTGAAATTGAATCAAATGTTGATGTAGAATTGGGAGAAATTGGTAATAATAGTGTCAAGTCATCTAATTCAACATCTAAAGTGCAAAATCTTACTAGGGTTGAGGTATATTCAAGCTACACAAATAGTTCTCAAAATAATGATTTTGAAGAAATGTTAGATATATGGAAAAGATTTCAGAAGAGTAAGAGTTGCACTAGTATTGGTGGTATGAAGATTTCTCCATACTCAAATCTAAAATCAAATTCAGAAAAAATCATTGGCAAAACAAAGATAAATTTTAGCGGTCCCTTTGGCATGCCACAAGAAATTGAAGCATCAAAAGGTGTTAATGAATTGATTGACAAGAGTTCTAATGAAAAAGTAAGTGGAGAGGAAGAGCATGAGAACGAGGAGATGCAAGAAAAAGGAAGTGTAAACAAGGAACAACTAATGCTACCTAGTCGTGGCATGATGACAAAACTTATTCTTGTTAGGATGTGTAGGAAGCTCTCAAAAAATCCTAATCTCCATGCTGCAGTTCTTGCCACTGTTTGGGCTCTAATATCATCAAGGTGGAACATTAAAATGCCATCAATCATACATGATTCAATTACAATAATTTCTCACACTGGACTAGGAATGGCCATGTTTAGTCTAGGCATATTCATGGCATTACAACCCAAAATCATTGCTTGTGGAAAAACTTCAGCAGCAATGTCTATGGTACTTAAATTCTTGGTTGGTCCATTATTGTTTGCTGCAACATCTGCAGCTGTTGGTATTCGTGGAGTTGTTTTTAAAGTAGGAATTATTCAGGCTGCTCTTCCCCAAGGTATTGTTCCCTTTGTTTTCGCCACAGAGTACAATGTCCACGCTGAAATATTTAACGCAGCGGTTTCTCTTGGATTGGCGCTTGCATTCCCTATAGCAATACTCTACTATATGATTCTTGGTGCTTGA 1014 0.36 MYEYRAAKIFISQQFIETNEGSHKVEIESNVDVELGEIGNNSVKSSNSTSKVQNLTRVEVYSSYTNSSQNNDFEEMLDIWKRFQKSKSCTSIGGMKISPYSNLKSNSEKIIGKTKINFSGPFGMPQEIEASKGVNELIDKSSNEKVSGEEEHENEEMQEKGSVNKEQLMLPSRGMMTKLILVRMCRKLSKNPNLHAAVLATVWALISSRWNIKMPSIIHDSITIISHTGLGMAMFSLGIFMALQPKIIACGKTSAAMSMVLKFLVGPLLFAATSAAVGIRGVVFKVGIIQAALPQGIVPFVFATEYNVHAEIFNAAVSLGLALAFPIAILYYMILGA 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02327 337 Pfam Membrane transport protein 1 332 IPR004776 GO:0016020|GO:0055085
Trre3g02327 337 MobiDBLite consensus disorder prediction 141 164 - -
Trre3g02327 337 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 1 336 - -
Trre3g02327 337 MobiDBLite consensus disorder prediction 141 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02327 Trre-Chr3 21569337 21573055 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02327 132 336 Organic Solute Cotransporters AT5G57090 50.244 8.62e-68 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02327 K13947 - vvi:100256460 223.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g02327 3 21569337 21573055 Trre3g02327 3 21569337 21573055 ECH
Trre15g05228 15 61667724 61669711 Trre3g02327 3 21569337 21573055 PCT