Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05228 ATGATTACTGGTAAGGATATATATGATGTTTTTGCCGCAATTGTGCCATTATATGTTGCTATGATATTAGCATACGGTTCGGTTCGATGGTGGAAAATCTTCACCCTAGATCAATGTTCTGGCATAAACCGTTTCGTCTCGGTTTTTGCAGTCCCGTTACTATCTTTCCATTTTATCTCTTCCAATGATCCTTATGCTATGAATTACCATTTCTTAGCAGCTGATTCCCTTCAAAAGGTAGTCATCCTTGGTGCTCTTTTTCTATGGAACACATTCACAAAAAACCAAGATAGTTTTGATTGGACAATTACACTTTTCTCTCTGTCAACTCTTCCTAACACACTTGTCATGGGAATCCCTCTTTTAAATGCTATGTATGGCGATTTCTCAGGAAATCTCATGGTACAAATTGTTGTTCTACAAAGTGTTATTTGGTACACTCTTTTGCTTTTCTTGTTTGAATATAGAGCTGCTAAACTTCTTATTTCAGAACAGTTTCCTGAAACTGCAGCTTCTATAACTTCATTCAAAGTTGATTCTGATGTTGTTTCCCTTAACGATAGAGAACAACTTGAAACTGATTCAGAGATAGGAGAAGATGGTAAACTCCGTGTTGTTGTTAAACGATCAACTACTAACTCTATGGTATCGGGGTCATTTAACAAATCTCATTTAAATAATATGACGCCACAAACTTCAAATCTTACCGGTATTGAGATATATTCGGTTCAATCATCAACAGAACCAACACCGATGCGATCTTCTAGTTTAAACCAAACCGAGTTTTACACAAATAGTTTTAAGAGCTATGGTACTCGTACTAATGGCGATGTTTATTCCATGCAATCTTCCAAAGAGGCAACACCTCTGTCTTCAAACTCAGTCGATGAGAATTTGAAGACGAATAAGAAAAGCAGAAGGCGGAGTATTAGTGGTGAGATGGTTAATAATACTATTGGTTCTTACCCTCCTCCAAATCCAATTCTTTCTGGTTCTACTAGTGCTGGTACAAAGAAGAAAGATAGCATTGGTTGTGGAAGTGGTAGTGGACCTAATGATTTGATAGAGAACATGAGTCCTGGCGTTGAAGTTAAGGAAGGAACAAAGTCTCCATATATTAGTAACAAGAAGAAGGTGGACTTGGAAGGAGGGGATGTAAACAAAAACAAACAGATGCCACCAGCAAGTGTGATAACAAGACTCATTCTCACCATGGTTTGGAGAAAACTCATCAGAAACCCTAATACCTACGCAAGTCTTATAGGAGTTGTTTGGTCTCTTATATCATTTGGGTTTCACATTGAAATGCCCTTGATCGTAAAAGGTTCTATCTCGATACTCTCTAATGCTGGTCTTGGAATGGCCATGTTCAGTCTAGGTTTGTTCATGGCATTACAGCCTAAGCTGATTCCATGTGGAAAAAGAGTTGCAACATATTCTATGGTTGTTAGGTTCTTGACCGGTCCAGCTGTGATTGCGGCAACCTCAATGGCAGTTGGTCTCCGTGGAGTTCTCTTACATGTTGCAATTGTTCAGGCTGCCCTTCCCCAAGGTATTGTTCCTTTTGTGTTTGCCAAAGAATACAATGTTCATCCAGATATACTCAGTACTGGGGTTATATTTGGAATGTTGGTTGCATTGCCCATAACATTACTCTACTATGTGATTCTTGGAGTATTGTAA 1683 0.3862 MITGKDIYDVFAAIVPLYVAMILAYGSVRWWKIFTLDQCSGINRFVSVFAVPLLSFHFISSNDPYAMNYHFLAADSLQKVVILGALFLWNTFTKNQDSFDWTITLFSLSTLPNTLVMGIPLLNAMYGDFSGNLMVQIVVLQSVIWYTLLLFLFEYRAAKLLISEQFPETAASITSFKVDSDVVSLNDREQLETDSEIGEDGKLRVVVKRSTTNSMVSGSFNKSHLNNMTPQTSNLTGIEIYSVQSSTEPTPMRSSSLNQTEFYTNSFKSYGTRTNGDVYSMQSSKEATPLSSNSVDENLKTNKKSRRRSISGEMVNNTIGSYPPPNPILSGSTSAGTKKKDSIGCGSGSGPNDLIENMSPGVEVKEGTKSPYISNKKKVDLEGGDVNKNKQMPPASVITRLILTMVWRKLIRNPNTYASLIGVVWSLISFGFHIEMPLIVKGSISILSNAGLGMAMFSLGLFMALQPKLIPCGKRVATYSMVVRFLTGPAVIAATSMAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLVALPITLLYYVILGVL 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05228 560 Pfam Membrane transport protein 10 554 IPR004776 GO:0016020|GO:0055085
Trre15g05228 560 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 1 558 - -
Trre15g05228 560 MobiDBLite consensus disorder prediction 281 298 - -
Trre15g05228 560 MobiDBLite consensus disorder prediction 311 340 - -
Trre15g05228 560 MobiDBLite consensus disorder prediction 281 359 - -
Trre15g05228 560 NCBIfam auxin efflux carrier 1 558 IPR014024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05228 Trre-Chr15 61667724 61669711 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05228 1 559 Organic Solute Cotransporters AT1G23080 54.444 0.0 602
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05228 K13947 - tcc:18589454 775.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g05228 15 61667724 61669711 Trre15g05228 15 61667724 61669711 ECH
Trre15g05228 15 61667724 61669711 Trre3g02327 3 21569337 21573055 PCT