Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02323 ATGTATGAAATGCAACAATTTCAACCTTATTGTCAACATGATAATCAGTTGACGGTGAAAATTGATATGACGAAGAAGAGAGAGCGGAAAAAAGTCACGGAGGAAGGAGAGAAGCGTCATGTTGTCGACCTGAGTGGTATGTCCTTGGAGTCGCTTCCCAAATCTTCGCTTCATTTAGCTATCATTACTAAGCTTGATCTATCTAATAACAATCTCCAGAATATTCCCGAGTCCTTAACGGCAAGATTACTGAACTTGGAGATGTTGGATGTGCACTCCAACCACCTCAGATCCCTACCCAACTCCATTGGCTGTCTCTCTAAACTCAAAGTTTTGAATGTCTCTGGCAACTTCATTGAATCACTTCCCTCAACCATTGAGAATTGCAGAGACTTAGAAGAACTGAATGTCAACTTCAACAACTTGAGCAAGCTACCAGACACAATTGGCTTTGAGCTCATAAAACTCATGAAACTTTCAGTCAATTCCAACAAGCTGGTGTTTCTTCCTAGCTCCACCTCTCACCTAACAGCTCTAAGAGTTCTCGATGTACGCCTAAACTGCCTCAGGAGTCTCCCTGACGACCTTGAGAACCTCATAAACCTTGAGACCCTAAATGTGAGTCAGAATTTCCAATATTTGGAGTCCTTACCCTACTCCATAGGTCTCCTCTTATCTCTGGTCGAATTGGACGTTAGCTACAACAATATTAAGAACTTGCCCGACTCAATTGGGTGCCTCCAAAAGCTTCAAAAGCTAAGTGTGGAGGGGAATCCGCTTATTTCACCTCCGCCGGAGGTGGTGGAGCAGGGATTGCATGTGGTGAAAGAGTATATGTGTGACAAAATGAACACAAGCCATCATATCCCAACCAAGAAGAGATGGTGGATGGTGAAATGTGGGACCTTCAATGGACACATGAAAAGTGGGAAACGACCAGAACATAAGGGTTTCAGTATGCTTCAGTATCAACCCATGAACGGTCTTGCTTCACCAGGCTTCATGGGGAGGTTCTCACCTCTTCGCCTCTTCTCACCCCGCCATTCCATCGGTTGA 1056 0.4441 MYEMQQFQPYCQHDNQLTVKIDMTKKRERKKVTEEGEKRHVVDLSGMSLESLPKSSLHLAIITKLDLSNNNLQNIPESLTARLLNLEMLDVHSNHLRSLPNSIGCLSKLKVLNVSGNFIESLPSTIENCRDLEELNVNFNNLSKLPDTIGFELIKLMKLSVNSNKLVFLPSSTSHLTALRVLDVRLNCLRSLPDDLENLINLETLNVSQNFQYLESLPYSIGLLLSLVELDVSYNNIKNLPDSIGCLQKLQKLSVEGNPLISPPPEVVEQGLHVVKEYMCDKMNTSHHIPTKKRWWMVKCGTFNGHMKSGKRPEHKGFSMLQYQPMNGLASPGFMGRFSPLRLFSPRHSIG 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02323 351 Gene3D Ribonuclease Inhibitor 2 150 IPR032675 -
Trre3g02323 351 Gene3D Ribonuclease Inhibitor 151 280 IPR032675 -
Trre3g02323 351 ProSiteProfiles Leucine-rich repeat profile. 61 82 IPR001611 GO:0005515
Trre3g02323 351 SMART LRR_typ_2 247 270 IPR003591 -
Trre3g02323 351 SMART LRR_typ_2 106 129 IPR003591 -
Trre3g02323 351 SMART LRR_typ_2 153 175 IPR003591 -
Trre3g02323 351 SMART LRR_typ_2 224 246 IPR003591 -
Trre3g02323 351 SMART LRR_typ_2 130 152 IPR003591 -
Trre3g02323 351 SMART LRR_typ_2 59 82 IPR003591 -
Trre3g02323 351 SMART LRR_typ_2 176 199 IPR003591 -
Trre3g02323 351 SMART LRR_typ_2 83 105 IPR003591 -
Trre3g02323 351 PANTHER - 42 159 - -
Trre3g02323 351 Pfam Leucine rich repeat 63 117 IPR001611 GO:0005515
Trre3g02323 351 Pfam Leucine rich repeat 155 210 IPR001611 GO:0005515
Trre3g02323 351 ProSiteProfiles Leucine-rich repeat profile. 108 129 IPR001611 GO:0005515
Trre3g02323 351 ProSiteProfiles Leucine-rich repeat profile. 85 106 IPR001611 GO:0005515
Trre3g02323 351 SMART LRR_bac_2 153 172 - -
Trre3g02323 351 SMART LRR_bac_2 176 195 - -
Trre3g02323 351 SMART LRR_bac_2 83 102 - -
Trre3g02323 351 SMART LRR_bac_2 129 148 - -
Trre3g02323 351 SMART LRR_bac_2 224 243 - -
Trre3g02323 351 SMART LRR_bac_2 199 220 - -
Trre3g02323 351 SMART LRR_bac_2 59 78 - -
Trre3g02323 351 SMART LRR_bac_2 106 125 - -
Trre3g02323 351 ProSiteProfiles Leucine-rich repeat profile. 226 247 IPR001611 GO:0005515
Trre3g02323 351 SUPERFAMILY L domain-like 40 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02323 Trre-Chr3 21535516 21538982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02323 65 340 Receptor kinase-like Gene Family AT5G51350 30.690 1.81e-17 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02323 - - gmx:100776295 516.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g02323 3 21535516 21538982 Trre3g02323 3 21535516 21538982 ECH
Trre15g05231 15 61681325 61684500 Trre3g02323 3 21535516 21538982 PCT