Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05231 ATGATGTACGAACAACAACAACGGTTACAACAACCGATGATAAAAACATCGGAGAGGAGCAAATATAATTCTAATTCGATAGAAGAAGTTGAGAGGCTTCAAATAGTTGATTTAAGTGGCATGTCCTTGGACTCTCTTCCCAACCCTTCTCTTAATTTGGCTACCATTTGCAAATTGGACCTCTCCAACAACAATCTTCAGAATATTCCGGAGTCGTTAACGGCGAGACTGCTGAACATAGTGGTGTTGGATGTGCACTCAAACCAGCTTAGGTCTCTTCCAAACTCCATTGGCTGCCTCTCTAAGCTCAAGCTTTTGAATGTCTCCGGAAACCTCATCCAACACCTCCCCAAGACAATTGAGAATTGCAGGGCCTTAGAAGATTTGAATTTAAATTTCAACAAGTTGATTCAACTACCAGACACAATAGGATATGAGCTACTAAACCTAAAGAAGTTATCAATCAACTCCAACAAATTGCTTTTCCTTCCACGCTCAACCTCTCATCTTACATCTCTAAAGATTCTCGACGCACGTCTCAATTGTCTAAGGTCTCTACCAGAAGATCTAGAGAATCTTGTCAACCTTGAAATCCTAAACGTGAGTCAAAACTTCCAATACTTGGATTCTATTCCTTACTCCATAGGACTTCTCTTATCTCTTGTTGAACTTGACATTAGCTACAATAAGATCAAATCTTTACCAGACTCACTTGGTTGCCTTAATAAGCTTCAAAAGTTGTGTGTGGAAGGGAATCCACTTTGTTCACCACCACCAGAAGTTATAGAACATGGATTGCATGCAGTGAAGGAGTATTTGTGTAATAAGATGAATACTGGTCATCAGAGTCCGGTTAAGAAGAAGTCATGGGTTGGAAGGTTGGTGAAATATGGGACCTTCAATGTTAGAAATGGTGCTCGTGAAGAACGCGAGGCTTTTATTCTCCCGGATTATAATAGATCTATTGATGGTCTCGCTTCTCCTCGTTATATGGGGATGTTTTCGCCACGCCGTCTCTTTTCCTCTCGTAATTACTTCAGCAACTGA 1047 0.4069 MMYEQQQRLQQPMIKTSERSKYNSNSIEEVERLQIVDLSGMSLDSLPNPSLNLATICKLDLSNNNLQNIPESLTARLLNIVVLDVHSNQLRSLPNSIGCLSKLKLLNVSGNLIQHLPKTIENCRALEDLNLNFNKLIQLPDTIGYELLNLKKLSINSNKLLFLPRSTSHLTSLKILDARLNCLRSLPEDLENLVNLEILNVSQNFQYLDSIPYSIGLLLSLVELDISYNKIKSLPDSLGCLNKLQKLCVEGNPLCSPPPEVIEHGLHAVKEYLCNKMNTGHQSPVKKKSWVGRLVKYGTFNVRNGAREEREAFILPDYNRSIDGLASPRYMGMFSPRRLFSSRNYFSN 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05231 348 MobiDBLite consensus disorder prediction 1 21 - -
Trre15g05231 348 SUPERFAMILY L domain-like 29 262 - -
Trre15g05231 348 Gene3D Ribonuclease Inhibitor 2 144 IPR032675 -
Trre15g05231 348 Gene3D Ribonuclease Inhibitor 145 275 IPR032675 -
Trre15g05231 348 ProSiteProfiles Leucine-rich repeat profile. 220 241 IPR001611 GO:0005515
Trre15g05231 348 SMART LRR_typ_2 170 193 IPR003591 -
Trre15g05231 348 SMART LRR_typ_2 218 241 IPR003591 -
Trre15g05231 348 SMART LRR_typ_2 147 169 IPR003591 -
Trre15g05231 348 SMART LRR_typ_2 77 99 IPR003591 -
Trre15g05231 348 SMART LRR_typ_2 100 123 IPR003591 -
Trre15g05231 348 SMART LRR_typ_2 53 76 IPR003591 -
Trre15g05231 348 SMART LRR_typ_2 124 146 IPR003591 -
Trre15g05231 348 ProSiteProfiles Leucine-rich repeat profile. 55 76 IPR001611 GO:0005515
Trre15g05231 348 PANTHER - 147 289 - -
Trre15g05231 348 Pfam Leucine rich repeat 58 113 IPR001611 GO:0005515
Trre15g05231 348 SMART LRR_bac_2 100 119 - -
Trre15g05231 348 SMART LRR_bac_2 170 189 - -
Trre15g05231 348 SMART LRR_bac_2 147 166 - -
Trre15g05231 348 SMART LRR_bac_2 77 96 - -
Trre15g05231 348 SMART LRR_bac_2 218 237 - -
Trre15g05231 348 SMART LRR_bac_2 53 72 - -
Trre15g05231 348 SMART LRR_bac_2 123 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05231 Trre-Chr15 61681325 61684500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05231 54 247 Receptor kinase-like Gene Family AT4G13920 33.990 7.67e-15 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05231 - - cam:101513208 568.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g05231 15 61681325 61684500 Trre15g05231 15 61681325 61684500 ECH
Trre15g05231 15 61681325 61684500 Trre3g02323 3 21535516 21538982 PCT