Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02299 ATGCGCTCAGGAGTTTATACATTACAAGAGACTTTAACAGCCGAGTCTGCTTCAATTTTGAAGCATTCTTTAGGCTTAGCACGTAGAAGAAATCATGCACAAATTACACCTCTTCATGTTGCTGCTACATTGTTGAGTTTAAGTGCTTCTTCTCTTAGAAAAGCATGTCTTAAATCTCAACAACAAAATAATCATAATCATAATCATAATCACCCTCTTCAATGTAGAGCTCTTGAACTTTGTTTTAATGTTGCTCTTAATAGACTTCCAACAACTACTACTTCACCTTTGATTCAACACCAACATGTTCCTTCGCTTTCGAACGCGCTTATTGCGGCGCTTAAAAGAGCTCAAGCTCATCAAAGAAGGGGGTGTATTGAGCAAAATCATCAACAACATCAACAACCACTTTTAAGTGTTAAAGTTGAACTTGATCAGCTTATACTTTCTATTCTTGATGACCCTTCTGTTAGTAGAGTTATGAGAGAAGCTGGTTTTTCAAGTACTTCTGTTAAAAATAACTTAGAACATGAAAATCATCATTCTTCTTCAACTTTATCAAACCATTCGGTTTTTCATTCTCTAAGTCATAATAATCATAATCACTTTTTGAGTTCTTATGGTACTACTTATGGACATGGTTATGGTTCTGTTTTGTTTTCTCCTCAGAAAAAACCATCACAAGTTTATAATAATCACTTTCCTTTACAATCTTGTAAAGAAGATGTTAAGCTTGTTTTTGATGTTCTTTTGAGGAAGAACAAAAAAAATGTTGTGATAGTTGGTGATACAGTTTCATTAACAGAAGGATTAGTTGATGAGTTAATGGAAAAATTTGAAAGAAATGAAGTTCCTAATGAGTTAAAAAAAACTCATTTTGTTAAGTTTCATCTTGGTTCTATTTCTTTGAAGTTTATGAAAAGAGAAGAAGTTGAAATTAATGTTTTAAGAGTGTTGAAAAGGAAAATTAGTGATTATGTTGCATTAGGTGTTGGAGCTGTTTTTTATGTTGGTGATTTGAAGTGGATAGTGAATGATGATGATGATTATGGTGATGAAAGTACTTTTAATCATGTTGATTATTTGGTTGATGAAATTGGAAAGTTGTTTTGTGGAGAAGAGATTAATAATGGTAAGATTTGGCTTATTGCAACAGCTAGTTATCAAAGTTATATGAGGTGTCAAATGAGAGTACCATGTTTTGAGAATCAATGGTGTCTTCAAGCTGTTCCTGTTCCATCTGGTGGACTTGGTTTAAGTCTTCATTCTTCAAGTGTGCATGATTCAAAAATGAGTATCTCTCAAAACCCTTCTCTTATGTTGGAATCAAAGCTCTTTAGTAACAAGGAGGAACATGATAAGCTTAATTGTTGTGAAGAATGTGCCACCAATTATGAAAAAGAAGCTCAATTGATCAAACCAAGTCAGAAGAATCTTTTGCCTTCTTGGCTTCAGTCTCATAGCACAGAAGCTCATCAGAAGGATGAATTAACCCAATTGAAGAAAAAGTGGAACAGATTGTGCCAATGTATTCACCAAAACAAACAACCTCAAAACCATTGGAACAGCCTTTATAATTCAAATGCAAAAATCTACCCTTATAATTCATCATATCCTTATTGGCCAAACCAAGTTACTAGTATCTTGCCAGATTCATCAAGTTCAATATCTTTTGCTGATTCTATAACCAAACCAGCTTATAGCTCAAACACCATACCCCGATTCCGGCGCCAACAATCATGCACCATTGAGTTCAATTTCAATGATGAAAAAACACAGAAAAACCAAACAACAACAGAAGAAACAAACTTTGATTCTCTTAAAGAAGTAGTAAAGACAACTCTTGCTCTTGGAAATTCAACATTCAATGATTTAGAGCAAAAAAAGGTTGAAAATTTAACACTTCAAAGAGAACATATTTGTAAAGTGTTGCAAGAGAATGTTCCATGGCAATATGAAACAGTTAGTTCAATAGCAGAAGCTTTGGTTGATTCATCAAAAACATCAAAGGAAAGTGCAACTTGGTTGTTTTTGCAAGGGAATGATACTGTTGGGAAAAAAAGATTGGCACTTGCAATTGCAGAATCAGTTTTTGGATCGGATGATGTTTTACTTCATTTGGATATGATGAAGAGAGAAAATTCAGAAACACCCTTTTCTGAAATGGTTATTGGGCCATTGAAAAATAATGAAAAGTTTGTTTTTTTGGTTGAAAATGTTGATTTTGGTGATACCCTTTTAAGGAAAATGCTTGAAGATGAATTTGGGGGTGCAAAGTTTGGAACTTCAGGCCAAAAAATATTCATATTGACCAATGGGGGCAATATGGTCATTGAAGATCAGAAGAAGGATTCAGTGATGAAGTTGGTTTTGAAGATTAGTGAAAGTGAAAAAAAATCAACTTTGGAGTTGTCATCATCTTCATCCACATCAAAATCACCTTGTTTAGGTAATAAAAGAAGAGCTGAATTTGAGTTTTTTAACAAGATGAAAAATCCAAGGATTGAAGAAAATGAAGGGAAGAAAAAGAGAGAATTTTCATTTTCAAGACAATTAAGCTTCAATAATACTCTTGACTTGAACATGAAAGTTGATGAAGAAGAAGATGAAGATGATGAGGGAGAAAATAGTCCAATTTCAAGTGATTTGACAAGAGAAATAGTAGGAGAGCATTTGATTTCAAATGGGTCATTTGACTCAATTGAGAATTTGTTTGAGTTGAGTCAAAGTCAAGCTAAGAATAAGGAAATGACAAAGATGTTTATGTCAAGGGTAAAAGAGTCATTTGAGGAGGTTTTCGGGAATGTAAAATTTAGTGTACAAGATAAGGTGATAGAGGAAATTGGTGTTGGGGGGATTGGTTCTTTTACTAACAACATGTTTGAGAAATGGCTAAAAGACATTTTTCAAACAAGTTTAGAGAGGGTTAATGGTGGGGGTAAAAATGGTATAGTTTTTACACTTTGTTGGGGTGGTAAAGAGGATAGAAAATGGGATAGTGGGTTTATGGGTTCATGTTTGCCTAAAAATATCCAAATTGTTAACTACTTAATGGATTGA 3060 0.3356 MRSGVYTLQETLTAESASILKHSLGLARRRNHAQITPLHVAATLLSLSASSLRKACLKSQQQNNHNHNHNHPLQCRALELCFNVALNRLPTTTTSPLIQHQHVPSLSNALIAALKRAQAHQRRGCIEQNHQQHQQPLLSVKVELDQLILSILDDPSVSRVMREAGFSSTSVKNNLEHENHHSSSTLSNHSVFHSLSHNNHNHFLSSYGTTYGHGYGSVLFSPQKKPSQVYNNHFPLQSCKEDVKLVFDVLLRKNKKNVVIVGDTVSLTEGLVDELMEKFERNEVPNELKKTHFVKFHLGSISLKFMKREEVEINVLRVLKRKISDYVALGVGAVFYVGDLKWIVNDDDDYGDESTFNHVDYLVDEIGKLFCGEEINNGKIWLIATASYQSYMRCQMRVPCFENQWCLQAVPVPSGGLGLSLHSSSVHDSKMSISQNPSLMLESKLFSNKEEHDKLNCCEECATNYEKEAQLIKPSQKNLLPSWLQSHSTEAHQKDELTQLKKKWNRLCQCIHQNKQPQNHWNSLYNSNAKIYPYNSSYPYWPNQVTSILPDSSSSISFADSITKPAYSSNTIPRFRRQQSCTIEFNFNDEKTQKNQTTTEETNFDSLKEVVKTTLALGNSTFNDLEQKKVENLTLQREHICKVLQENVPWQYETVSSIAEALVDSSKTSKESATWLFLQGNDTVGKKRLALAIAESVFGSDDVLLHLDMMKRENSETPFSEMVIGPLKNNEKFVFLVENVDFGDTLLRKMLEDEFGGAKFGTSGQKIFILTNGGNMVIEDQKKDSVMKLVLKISESEKKSTLELSSSSSTSKSPCLGNKRRAEFEFFNKMKNPRIEENEGKKKREFSFSRQLSFNNTLDLNMKVDEEEDEDDEGENSPISSDLTREIVGEHLISNGSFDSIENLFELSQSQAKNKEMTKMFMSRVKESFEEVFGNVKFSVQDKVIEEIGVGGIGSFTNNMFEKWLKDIFQTSLERVNGGGKNGIVFTLCWGGKEDRKWDSGFMGSCLPKNIQIVNYLMD 1019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02299 1019 ProSiteProfiles Clp repeat (R) domain profile. 8 183 IPR004176 -
Trre3g02299 1019 Gene3D - 603 831 IPR027417 -
Trre3g02299 1019 Gene3D - 231 413 IPR027417 -
Trre3g02299 1019 SUPERFAMILY Double Clp-N motif 11 175 IPR036628 -
Trre3g02299 1019 Gene3D - 9 180 IPR036628 -
Trre3g02299 1019 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 985 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02299 Trre-Chr3 21167257 21172524 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02299 - - cam:101489668 1258.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g02299 3 21167257 21172524 Trre3g02299 3 21167257 21172524 ECH
Trre15g05244 15 61759169 61762592 Trre3g02299 3 21167257 21172524 PCT