Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05244 ATGCGCTCAGGAGGTTGTGCATTGCAGCAGACCCTCACAGCAGAGGCTGCTTCAGTTTTGAAGCATTCTCTTGTGTTGGCTAGAAGGAGAGGCCATCCACAGGTCACTCCTCTACATGTAGCCATCACTTTGCTAACTTTAAGACTCAGTTCTTTCAAAAGGGCATGTCTTAAATCTCATCAACCTCACCACCAAACTTCACAACATCCACTTCAATCTAGAGCTCTTGAGCTTTGTTTCAATGTAGCTCTTAACAGATTACCAACAACACCTTCTCCTTTGATTCACTCTCAACCTTCACTTTCCAATGCTCTCATTGCTGCATTGAAAAGAGCACAAGCTCATCAAAGAAGAGGTTCCATAGAACAACAGCAGCAGCAGCAGCAGCAACAGCAGCAAACAGTTCTTACTGTGAAAGTTGAACTTGAACAGCTTATTATATCTATTCTTGATGATCCTAGTGTTAGTAGGGTTATGAGAGAAGCTGGTTTTTCTAGTACTCTTGTTAAGAACAATTTAGAAGACTCTTGTTCACCTTCTAATTCTGTTTTTAAATGTTATAATAGTTCTGGTGGTGGTGTCTTTTCATCTCCTTGTTCACCTTCTACTAGTGAGAATCATAGAGAAACCATTAACCTTAACAGTTTCAGACAGAATCATTTCATGGCTGCTGCTGCTGCTGCTACTAGTGCTAAGTACAATTCTTCAGAGTTTAACTCAGTTCTGTTTTCTCCACCAAAGAGAACTGAGTTGATGAATTCATCAAATGGACTTGGCTTAACCCTTCATTCTTCTTCCAGTGTTCTTGATTCAAAGATAACTATCTCTCAGAATCCATCTCATCATATGCTTGAAACAAAGCCCTTTAGTAGTAATAAGGAGCAAGAGGATAAGCTTAATTGCTGTGAAGAATGTGCCTCAAATTATGAAAAAGAAGTTCAATTTCTCAAACCTGAACAGAAGAAAACATTGCCTTTCTGGCTTCAGTCTCATGGCACAGAAGAACAAAAGAAGGATGGATTAACCGAGTTGAAAAGAAAATGGAATAGACTTTGCCACTGTCTACACCAAAACAAACAGCATCAGAACAACTGGAACTGGAGCAACAATAACAGTTCAAATCCCAACAACTCATCAAGTTCCATATCTTATAGCTCCAATCTTCTTACACCTCGATTCCGTCGCCAACAATCATGCAGCACTATTGAGTTCAATTTCAATGATAATAGACAAGCAACAGAACCAGTCTTTGATTCTCTTGCAAGCATGGAAGGTAAAGAAGTAAAGATTAGTCTTACACTTGGAAACGGTGATTCGAGTGAAAAGGTGGGAAATATAACTGATACAAAACTGCAACAAGCTCATGTTTGTAAACTATTGCAGGAGAATGTGCCATGGCAAAATGAAACTATTCCTTCAATAGCAAAGGCCTTGACCGATACCAAATCGAAAAAACAAAGTGAAACTACATTTACATGGTTTGTTTTACAAGGCAATGATTTCATAGGTAAAAGAAGATTAACACTTGCTATTGCAGAATCAGTTTTTGGTTCAGCTGATTTAGTCCTTCAATTAGATATGCTAAAAAAGGAAACTTCAATAGCCCCATTTTCTGAAATGCTATTAGGAGCATTAAGAACACATCAACAACTTGTGGTTTTAATAGAAAATGTTGATTTTGCTGATACCCAATTCATGAAATTTCTCACTGATGGATATGAAAAAGGAAAGTTTGAAACTTTAAGTAGCAAAGAAGGGAATTTAGGTCAAGTAATATTCATATTGACAAAAGGTAGATCCACAAGCATTGAAGAGAAGAACAAAAAACCTGTTATCAATTTGTTATGGCAAATTAGTGAAATTAAACCTAATTTCTTGAGCCCCAAGAGAAAAGCTGAATTGGATTTGTTTTCAAAAATCAAGAACCCTAGAATTGAAGAGAATGAAAAGGGGTTGTTGATTTCTGAACAAGGAAGCAAAAAGATAGAATTTTTAAGACAATCAAGCTTTAACAGTAACAGTAACACCCTTGATTTGAACATGAAAGCTGATGAAGAAGAAGCTGGTGAAGAAGATAAAGAAAAAAGGGAAAGTAGCTCAATTTCAAGTGATTTAACTAGAGAAGCTATTGTTAATCCATTGAACTCAAATGGGTTTCTTGATTTAATTGAGAACAAGTTTGAGTTTAACACAAATTCAGATAAAGACAGAGAAAAGACAGAATTTTTTCTGTTTAAAATCAAAGGGTCATTTGAAGATGTTTGTGGTAAGAAAAATGTGGTGAATTTAAGTGTAGATGAAAAAGTGATTAAAGATATGTGTTTGGGGTGTTGTTGTTTTTTCACTAACAAAATGTTTGAGAAATGGCTGAAAGACATTTTTCAAAGCAGTTTAGAAACAGTTAACTTTGGAGGGAAGGAGGGTATACATTTTAGGCTTTGTTTGGGTGATAGAAATTGGGATAGTGGGTTTATGGGTTCTTCTCTGCCTAAGAGTATTCAAGTTAACTACTTGGTAGAGTGA 2523 0.3631 MRSGGCALQQTLTAEAASVLKHSLVLARRRGHPQVTPLHVAITLLTLRLSSFKRACLKSHQPHHQTSQHPLQSRALELCFNVALNRLPTTPSPLIHSQPSLSNALIAALKRAQAHQRRGSIEQQQQQQQQQQQTVLTVKVELEQLIISILDDPSVSRVMREAGFSSTLVKNNLEDSCSPSNSVFKCYNSSGGGVFSSPCSPSTSENHRETINLNSFRQNHFMAAAAAATSAKYNSSEFNSVLFSPPKRTELMNSSNGLGLTLHSSSSVLDSKITISQNPSHHMLETKPFSSNKEQEDKLNCCEECASNYEKEVQFLKPEQKKTLPFWLQSHGTEEQKKDGLTELKRKWNRLCHCLHQNKQHQNNWNWSNNNSSNPNNSSSSISYSSNLLTPRFRRQQSCSTIEFNFNDNRQATEPVFDSLASMEGKEVKISLTLGNGDSSEKVGNITDTKLQQAHVCKLLQENVPWQNETIPSIAKALTDTKSKKQSETTFTWFVLQGNDFIGKRRLTLAIAESVFGSADLVLQLDMLKKETSIAPFSEMLLGALRTHQQLVVLIENVDFADTQFMKFLTDGYEKGKFETLSSKEGNLGQVIFILTKGRSTSIEEKNKKPVINLLWQISEIKPNFLSPKRKAELDLFSKIKNPRIEENEKGLLISEQGSKKIEFLRQSSFNSNSNTLDLNMKADEEEAGEEDKEKRESSSISSDLTREAIVNPLNSNGFLDLIENKFEFNTNSDKDREKTEFFLFKIKGSFEDVCGKKNVVNLSVDEKVIKDMCLGCCCFFTNKMFEKWLKDIFQSSLETVNFGGKEGIHFRLCLGDRNWDSGFMGSSLPKSIQVNYLVE 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05244 840 Coils Coil 292 312 - -
Trre15g05244 840 Gene3D - 436 642 IPR027417 -
Trre15g05244 840 MobiDBLite consensus disorder prediction 680 702 - -
Trre15g05244 840 MobiDBLite consensus disorder prediction 363 383 - -
Trre15g05244 840 Gene3D - 9 177 IPR036628 -
Trre15g05244 840 FunFam protein SUPPRESSOR OF MAX2 1 9 179 - -
Trre15g05244 840 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 199 - -
Trre15g05244 840 SUPERFAMILY Double Clp-N motif 12 171 IPR036628 -
Trre15g05244 840 MobiDBLite consensus disorder prediction 675 702 - -
Trre15g05244 840 ProSiteProfiles Clp repeat (R) domain profile. 8 180 IPR004176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05244 Trre-Chr15 61759169 61762592 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05244 - - aprc:113853131 947.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g05244 15 61759169 61762592 Trre15g05244 15 61759169 61762592 ECH
Trre15g05244 15 61759169 61762592 Trre3g02299 3 21167257 21172524 PCT