Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02285 ATGGCCACCGCTCAACCACCTCAAAACGGCACCACCACCGCCACCGCCACCGCCACAAACTCACTCCCACAAGAAAACCTCTCCGCCACCCAACCACTCACCACTTCCGAAGCCAACACATCCCCAACCGCAAACGAATCAACTCAAGACCCCGATACCCTAACCGAAACTGAAACAGACACCGCCGCCGCCGTTATCACTCCGCCGGAGAAGAGATGGTCAGGTTGGCCTGGAGACTGCGTGTTCCGTTTGATTGTTCCTGTTGCCAAAGTTGGTGGCATCATTGGTCGCAAAGGAGAACTCATCAAGAAGCTATGTGATGAAACGAAAGCTCGTATTCGTGTTCTTGATGCTTCTCCTGGTACTCCTGATCGAATTATACTTATATCAGGGAAGGAAGAGCTAGAGGCAGCTATTTCACCTGCAATGGATGCTGTATTAAGGATATTCAAACGCGTCTCTGGATTATCCGAAACTGACAGTGAGATTAAAGGATCTGCTGGGCTTACAATTTGTTCCATCCGATTATTGGTGGCATCAACACAGGCTATCAGTTTGATTGGAAAGCAAGGATCACTAATCAGATCCATACAGGATAGTTCCGGTGCTTCTGTTAGAGTACTGTCTGGAGACGAGGTTCAATCTTTTGCTACTGCGGATGAGAGGATTGTAGACATGCAGGGAGAAACCTTGAAGGTTCTTAAAGCTCTGGAAGCCGTGATTGGCCATCTGAGGAAGTTTTTGGTTGATCACAGCATTCTTCCCCTATATGAGAAAACTTACAATGCATCTATCCCACAACAAGATCGTCAAGCAGAAACCTGGTCCGACAAGCCCTCGCTGCATACCACTTCCCAAAATAGCATGTTTTCTGATATTCCTCTTCCAACAAAAAGGGATTCTATCTTCGCTGACCGTGAAAGTCATTTGGACTCATTACTCTCCTCCTCCATCTATGGGCAAGATTCTTCCCTTTCTGGTGTTCGTTCTTCAACTCTTGGTCGTGTTGGTGCTCCTATTGTTACTACGGTAATCCAAACAATGCAAATACCACTATCCTATGCAGAGGACATCATTGGCATTCAAGGGACTAATATAGATTATATTCGTCGCACTAGTGGAGCCATATTGACTGTGCAGGAAAGCAGGGTGCCTGATGAAATTGTTGTGGAAATAAAAGGAACATCATCCCAGGTTCTAACGGCTCAGCAATTGATTCAGGAAGTTGTAAGCAGTCACAGAGAACCTGTCGCCAATAGCTACGGGAGGTTGGATGCAGGCAGAATAGATGTGGGTCCTAGGTCTTCATATTCTCAATCTTCATACTCTCAGTTGGGAAATACATCTCGCATCCCACCTTCTTCATTGCCCTCACAATCATACACCGGTTATGGATCATCTGGTTTAGGAGACTACAGTACTTTCAGGCTTTAA 1434 0.463 MATAQPPQNGTTTATATATNSLPQENLSATQPLTTSEANTSPTANESTQDPDTLTETETDTAAAVITPPEKRWSGWPGDCVFRLIVPVAKVGGIIGRKGELIKKLCDETKARIRVLDASPGTPDRIILISGKEELEAAISPAMDAVLRIFKRVSGLSETDSEIKGSAGLTICSIRLLVASTQAISLIGKQGSLIRSIQDSSGASVRVLSGDEVQSFATADERIVDMQGETLKVLKALEAVIGHLRKFLVDHSILPLYEKTYNASIPQQDRQAETWSDKPSLHTTSQNSMFSDIPLPTKRDSIFADRESHLDSLLSSSIYGQDSSLSGVRSSTLGRVGAPIVTTVIQTMQIPLSYAEDIIGIQGTNIDYIRRTSGAILTVQESRVPDEIVVEIKGTSSQVLTAQQLIQEVVSSHREPVANSYGRLDAGRIDVGPRSSYSQSSYSQLGNTSRIPPSSLPSQSYTGYGSSGLGDYSTFRL 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02285 477 Gene3D - 79 248 - -
Trre3g02285 477 SMART kh_6 342 411 IPR004087 GO:0003676
Trre3g02285 477 SMART kh_6 170 245 IPR004087 GO:0003676
Trre3g02285 477 SMART kh_6 78 151 IPR004087 GO:0003676
Trre3g02285 477 MobiDBLite consensus disorder prediction 269 290 - -
Trre3g02285 477 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 339 412 IPR036612 GO:0003723
Trre3g02285 477 MobiDBLite consensus disorder prediction 434 463 - -
Trre3g02285 477 CDD KH-I_PEPPER_rpt2_like 175 245 - -
Trre3g02285 477 CDD KH-I_PEPPER_rpt1_like 79 147 - -
Trre3g02285 477 ProSiteProfiles Type-1 KH domain profile. 79 146 - -
Trre3g02285 477 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 170 252 IPR036612 GO:0003723
Trre3g02285 477 Gene3D K Homology domain, type 1 341 415 IPR036612 GO:0003723
Trre3g02285 477 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 73 146 IPR036612 GO:0003723
Trre3g02285 477 MobiDBLite consensus disorder prediction 1 57 - -
Trre3g02285 477 ProSiteProfiles Type-1 KH domain profile. 171 240 - -
Trre3g02285 477 ProSiteProfiles Type-1 KH domain profile. 343 406 - -
Trre3g02285 477 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 68 438 - -
Trre3g02285 477 Pfam KH domain 174 240 IPR004088 GO:0003723
Trre3g02285 477 Pfam KH domain 82 139 IPR004088 GO:0003723
Trre3g02285 477 Pfam KH domain 346 408 IPR004088 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02285 Trre-Chr3 20960352 20966998 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02285 K21444 - gmx:100815466 654.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g02285 3 20960352 20966998 Trre3g02285 3 20960352 20966998 ECH
Trre15g05248 15 61799340 61802536 Trre3g02285 3 20960352 20966998 PCT