LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre15g05248	ATGGCCACCGTGGCGGAGCCAATTCAGAACGGAACTTTACAATCAGAACCACTCGCCGCCGATACAATTTTGGATCCCGCCGCCAATCTCTCAACGGAGGAATCAGATTCCGCAGACAAGAGATGGCCTGGTTGGCCTGGTCACTGCGTTTTCCGGTTAATCGTTCCGGTTCTTAAAGTCGGCATCATCATCGGTCGTAAAGGAGAACTCATAAAAAAAACTTGCGAAGAAACTCGTGCTCGCATTCGTGTTCTTGATGCTCCAGTTGGCACTCCTGATCGAATCGTACTTATATCAGGGAAGGAAGATTTGGAGGCACCACTTTCTCCTGCAATGGATGCTGTAATAAGGGTTTTTAAACGTGTTTCCGGATTAACAGAAACGGATGACAGTAATACAGGATCAGGAGCTGCAGCGGCTGCATTTTGTTCAATACGTTTATTGGTGGCCTCGACACAAGCTATCAATTTGATAGGAAAGCAGGGTTCGTCGATTAAAACTATACAGGAAAATTCTGGTGTTACTGTTAGAGTTTTGTCTGGAGAGGAGCTTCCATCTTATGCTGGTCCCGATGAGAGGATTGTGGAACTGCAGGGAGAAACCTTGAAGGTCCTTAAGGGTCTGGAAGCTGTAGTCGGGCACCTGAGGAAGTTTTTGGTTGATCAAAGTGTTCTTCCCCTATTTGAGAAAACTTGCAATGCAACAATCGCCCAAGACCGCCAGACGGATGCCTGGGCAGACAAACCATCACTGCACAGTGCTTCACAATCTAGTATTGTTACTGATATTCCTCTGTCATCAAAAAGGGATTCTTTCTTTGCTGACCGTGAAAGCCAATTGGATTCGTTGCTGTCTTCCTCGACAATGTCACTATATGGACAAGATTCTTCAATTTCCGGTCTTCGTTCTTCAGCATTTAATCGTGCCAGTGCTTCCATTGTAACTACGGTAATACAAACAATGCAAATACCACTGTCCTACGCAGAGGACATAATTGGTATTCAAGGGACTAATATTGATTACATTCGCCGTACTAGTGGAGCCATATTGACTGTGCAGGAGAGCAGGGTGCCTGATGAAATTATTGTGGAAATAAAAGGCACCTCATCTCAAGTTCAAACAGCCCAACAATTGATTCAGGAAGTTATAACCAATCACAACGAAACCATCGCTAGTAATTATGGCAGGTTAGATGCAGGTCTGAGGTCTTCTTACTCTCAATTAGGCAGTTCATCCTATCCCTCATCATCCTTGCCCTCACAACCCTACAATGGGTATGGATCTTCCGGTCTAGGGGACTATAGTACTTTCAGACTTTAA	1320	0.4492	MATVAEPIQNGTLQSEPLAADTILDPAANLSTEESDSADKRWPGWPGHCVFRLIVPVLKVGIIIGRKGELIKKTCEETRARIRVLDAPVGTPDRIVLISGKEDLEAPLSPAMDAVIRVFKRVSGLTETDDSNTGSGAAAAAFCSIRLLVASTQAINLIGKQGSSIKTIQENSGVTVRVLSGEELPSYAGPDERIVELQGETLKVLKGLEAVVGHLRKFLVDQSVLPLFEKTCNATIAQDRQTDAWADKPSLHSASQSSIVTDIPLSSKRDSFFADRESQLDSLLSSSTMSLYGQDSSISGLRSSAFNRASASIVTTVIQTMQIPLSYAEDIIGIQGTNIDYIRRTSGAILTVQESRVPDEIIVEIKGTSSQVQTAQQLIQEVITNHNETIASNYGRLDAGLRSSYSQLGSSSYPSSSLPSQPYNGYGSSGLGDYSTFRL	439

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre15g05248	439	Pfam	KH domain	319	381	IPR004088	GO:0003723
	Trre15g05248	439	Pfam	KH domain	145	206	IPR004088	GO:0003723
	Trre15g05248	439	Pfam	KH domain	51	103	IPR004088	GO:0003723
	Trre15g05248	439	Gene3D	K Homology domain, type 1	314	390	IPR036612	GO:0003723
	Trre15g05248	439	Gene3D	K Homology domain, type 1	48	121	IPR036612	GO:0003723
	Trre15g05248	439	ProSiteProfiles	Type-1 KH domain profile.	142	211	-	-
	Trre15g05248	439	SUPERFAMILY	Eukaryotic type KH-domain (KH-domain type I)	41	102	IPR036612	GO:0003723
	Trre15g05248	439	CDD	KH-I_PEPPER_rpt2_like	146	216	-	-
	Trre15g05248	439	ProSiteProfiles	Type-1 KH domain profile.	48	115	-	-
	Trre15g05248	439	SMART	kh_6	47	120	IPR004087	GO:0003676
	Trre15g05248	439	SMART	kh_6	315	384	IPR004087	GO:0003676
	Trre15g05248	439	SMART	kh_6	141	216	IPR004087	GO:0003676
	Trre15g05248	439	ProSiteProfiles	Type-1 KH domain profile.	316	379	-	-
	Trre15g05248	439	SUPERFAMILY	Eukaryotic type KH-domain (KH-domain type I)	311	385	IPR036612	GO:0003723
	Trre15g05248	439	PANTHER	KH DOMAIN CONTAINING RNA BINDING PROTEIN	39	409	-	-
	Trre15g05248	439	SUPERFAMILY	Eukaryotic type KH-domain (KH-domain type I)	139	223	IPR036612	GO:0003723
	Trre15g05248	439	Gene3D	K Homology domain, type 1	143	218	IPR036612	GO:0003723
	Trre15g05248	439	CDD	KH-I_PEPPER_rpt1_like	48	116	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre15g05248	Trre-Chr15	61799340	61802536	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre15g05248	K21444		-	gmx:100802089	602.438

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Trre15g05248	15	61799340	61802536	Trre15g05248	15	61799340	61802536	ECH
	Trre15g05248	15	61799340	61802536	Trre3g02285	3	20960352	20966998	PCT