Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02280 ATGGGAACATTTACAAGCTTTAGAAAAGCCTATGGAGCTCTCAAGGACTCCACCAAGGTTGGCCTTGCCAAAGTCAATAGTGAATACAAGGAGTTGGATATTGCCATTGTGAAAGCTACCAATCATGTTGAATATCCTCCAAAGGAACGCCATGTTAGAAAAATTTTCTATGCGACATCGGCACACCAACCACGCGCGGATGTGGCATACTGCATTCATAAGCTTTCCAAGAGACTTGCAAAGACACGAAGTTGGATAGTTGCTATAAAGACATTGATAGTGATTCATAGGACTTTGAGAGAAGGCGATCCTACTTTCCGAGAAGAGCTTGTAAATTACGCGCGCAGAGGACATATTCTCCAAATATCCAATTTCAAAGATGACTCAAGTCCTCAAGCTTGGGATTGTTCTGCATGGGTTCGAACCTACGCACTATTTTTAGAAGAAAGACTCGAATGTTTTAGAGTCCTTAAATATGACATTGAATCAGAACGCTTAGTAAAATCATCGCCAGCTTCAACTAAAGCACATAGTAGAACTCGGTCGTTGGCTAATGACGATCTACTGGAGCAACTACCTGCTTTGCAACAACTTTTATTTCGACTTATTGCTTGTCAGCCTGAGGGATGTGCTTATAACAATTATCTAGTACAATATGCATTGGCTTTGGTATTGAAAGAGAGTTTCAAAATATATTGTGCACTCAATGATGGAATCATTAATCTTGTGGACATGTTTTTCGAAACTTCGAGACATGAAGCAGTGAAGGCTTTAAATGTATATAAACGAGCTGGCCAACAGGCTGAAAATCTTGCAGATTTTTATGAATACTGCAAAGGCTTAGACCTTGCTAGGAATTTCCAATTTCCAACGCTAAGACAGCCACCTCCATCATTCCTTGCCACAATGGAAGAATATATCAAAGAAGCACCTCAATCAGGATCTATGAATAAGAGATTGGAGTATGAGCAAAATGATGAATCCGCTGAAGAAGAATCGGAGCCAAAAGAACCCGAAGAGCCACAAGAAAACGAGAAACAAGAAGAGGAAGTCAATGAGGAAGAAGAAACACCCGAGGAAGAAACGCAACCTAGCGAGGAGGAAGTTGAGCCTCCTCCATTGATATCAACTGACGGTACCGATGATTTGTTGGGTTTGGATGAAATAAATCCTAGAGCCGTAGAATTGGAGGAAAACAATGCCATGGCTCTTGCAATCATACCGCCCGGTGGAAATAATAATTCGAACAATCTTGCTTTGAGTAACATTGATGGCACCACCGGTTGGGAACTTGCATTGGTTACGACACCAAGTAACCATACTAGTCAAGCACCGGATCGCAGAATGGCCGGTGGTTTTGACAAGCTATTACTAGACAGCTTATACGAAGACGATAGCGCAAGAAGACAACTTCAACTTCAAAATGCAGGTTATGGACATGAAGAAATAACTGTACAAAATCCATTTGATCATTATAATCAAAATGATCCATTTGCAATGTCTAAGAACATAGCACCTCCAACAAATGTTCAATTAGCATTGTTGACTCAACAACAACAGCAACAACAAATGATGTTCCAACAACAACAACAACAACAAATGATGTATCCACAAAATCAACAACAACAAAATTATAACATGGCTATGGTTCCTCATCAACAACAACCTAATTCTCAACAATATCCTCAACAATTGCAAATTATGGGAAATCATAATCCATTTGGTGATCCTTTACCTGTGGCTAGTTATCCTCATAACTCTTTGCCTCAACAAGGAAATTACAATTTAATGTAG 1794 0.398 MGTFTSFRKAYGALKDSTKVGLAKVNSEYKELDIAIVKATNHVEYPPKERHVRKIFYATSAHQPRADVAYCIHKLSKRLAKTRSWIVAIKTLIVIHRTLREGDPTFREELVNYARRGHILQISNFKDDSSPQAWDCSAWVRTYALFLEERLECFRVLKYDIESERLVKSSPASTKAHSRTRSLANDDLLEQLPALQQLLFRLIACQPEGCAYNNYLVQYALALVLKESFKIYCALNDGIINLVDMFFETSRHEAVKALNVYKRAGQQAENLADFYEYCKGLDLARNFQFPTLRQPPPSFLATMEEYIKEAPQSGSMNKRLEYEQNDESAEEESEPKEPEEPQENEKQEEEVNEEEETPEEETQPSEEEVEPPPLISTDGTDDLLGLDEINPRAVELEENNAMALAIIPPGGNNNSNNLALSNIDGTTGWELALVTTPSNHTSQAPDRRMAGGFDKLLLDSLYEDDSARRQLQLQNAGYGHEEITVQNPFDHYNQNDPFAMSKNIAPPTNVQLALLTQQQQQQQMMFQQQQQQQMMYPQNQQQQNYNMAMVPHQQQPNSQQYPQQLQIMGNHNPFGDPLPVASYPHNSLPQQGNYNLM 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02280 597 MobiDBLite consensus disorder prediction 310 385 - -
Trre3g02280 597 Gene3D ANTH domain 173 326 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Trre3g02280 597 ProSiteProfiles ENTH domain profile. 24 161 IPR013809 -
Trre3g02280 597 SMART enth_2 30 161 IPR013809 -
Trre3g02280 597 Pfam ANTH domain 31 309 IPR011417 GO:0005543
Trre3g02280 597 Gene3D - 5 161 IPR008942 -
Trre3g02280 597 SUPERFAMILY ENTH/VHS domain 31 162 IPR008942 -
Trre3g02280 597 FunFam Putative clathrin assembly protein 173 321 - -
Trre3g02280 597 FunFam Clathrin assembly protein AP180 6 161 - -
Trre3g02280 597 SUPERFAMILY GAT-like domain 178 309 - -
Trre3g02280 597 MobiDBLite consensus disorder prediction 572 597 - -
Trre3g02280 597 CDD ANTH_N 32 154 - -
Trre3g02280 597 MobiDBLite consensus disorder prediction 326 367 - -
Trre3g02280 597 PANTHER CLATHRIN ASSEMBLY PROTEIN 7 525 IPR045192 GO:0048268|GO:0072583
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02280 Trre-Chr3 20912120 20916527 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02280 K20044 - gmx:100783084 836.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g02280 3 20912120 20916527 Trre3g02280 3 20912120 20916527 ECH
Trre15g05251 15 61832282 61836046 Trre3g02280 3 20912120 20916527 PCT