Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05251 ATGGGAACGTACCAAACATTGAGAAAGGCCTACGGAGCGCTTAAAGATTCCACCAAGGTTGGCCTAGCCAAGGTCAATAGCGATTACAAGGAATTGGACATTGCAATTATTAAAGCTACAAGTCACGTAGAATATCCTCCCAAAGAACGTCATGTTCGAAAAATATTCTATGCCACATCCGCGCACCAACCAAGGGCAGATGTAGCATATTGTATCCACACACTTTCGAAGAGACTTTCCAAGACGCGGAATTGGATAGTTGCCATAAAGACATTGATAGTGATTCATAGGATATTGAGAGAGGGTGATCCTAGCTTCAAAGAAGACCTTGTAACCTACTCGCGCAAGGTTCGTTTTCTGCAAATTCCCAATTTCAAAGATGACTCAAGCCCTCTAGCTTGGGATTGTTCTGCATGGGTTCGAACCTATGCACAATTTTTAGAAGAAAGGCTTGAATGTTTTAGAATTCTTAAATATGACATTGATCTCGAGCATTTAACAAAAGCATCGCCGAATTCAACAAAGGCACGTAGCAAAACAGGAATGTTGACCAGTGATGAGCTGTTGGAGCAGCTTCCGGCACTGCAACAACTTCTTTACCGACTTATTTGCTGTCAGCCTGAAGGATCAGCTTTCAACAATTATCTAATACAGTATGCATTAGCCTTGATTTTGAAAGAGAGTTTCAAAATATATTGTGCCCTCAATGATGGAATCATAAAACTTGTGGAAGTGTTCTTTGATATGGCGAGATATGACGCGATAAAGGCTATGCATATTTATAAAAGAGCTGGCCAACAGGCTGAAAATCTTGCTGATTTCTATGAATACTGCAAAGGCTTAGACCTTGCTAGGAATTTTCAATTTCCAATTCTAAGACAGCCACCACCTTCTTTTGTTGCCACAATGGAAGAATACATTAAAGAAGCACCTACATCAGGCAATGTTAAGAGGCTGGAGTATAAAAAAGATGACGAATCACCAAAAGAAGAACCGGAACAAAAAGAAACTGAAAAGCCTGAGGTAATTGAGGAGCAAGCTGAAGAAGTCAAGAAGGAAGAACCAGTTGATAAGGATCAGACAGAAGAGACTGAACTTCCTCCTCTGATATCAACTGATGGTGATGATGATTTGCTGGGTCTAAACGAAATAAATCCGAAAGCTCAAGAACTAGAGGATAGCAATGCTTTGGCACTAGCAATTTTACCACCTGGTGGAAACAATTCGAACAATCTTGCTTTGACTGACATAAGTGGAACTACTGGTTGGGAACTTGCACTCGTTACGACACCAAGCAACCACATGAGCCAAGCGCCGGATCGAAAAATGGCTGGTGGATTTGACAAGTTATTGCTAGACAGTTTGTATGAAGATGAAAATGCCAGGAGACAACTTCAACTGCAAAATGCTGGTTATGGATATGGCGCAACGACCATGCATAATCCATTCGATAATTATAATCAACATGATCCATTTGCAGTATCGAACATCGTAGCTCCTCCGTCTAATGTACAAATGGCATTAATGACTCAACAACAAATGATGTTCCAACAACAGCAACAACATCAACAACACAACATGATGATGGTACCTTATCAGCAACAACATCCACATACTCAGTACCCTCAACAGATGTCAGTTACGAGTTATTCTAATCCATTTGGAGATCCTTTACCTGTACCTAGCTATTCTTATAGTTCACTGCACCATCATCAAGGGAACTACAATATAATGTAG 1737 0.4053 MGTYQTLRKAYGALKDSTKVGLAKVNSDYKELDIAIIKATSHVEYPPKERHVRKIFYATSAHQPRADVAYCIHTLSKRLSKTRNWIVAIKTLIVIHRILREGDPSFKEDLVTYSRKVRFLQIPNFKDDSSPLAWDCSAWVRTYAQFLEERLECFRILKYDIDLEHLTKASPNSTKARSKTGMLTSDELLEQLPALQQLLYRLICCQPEGSAFNNYLIQYALALILKESFKIYCALNDGIIKLVEVFFDMARYDAIKAMHIYKRAGQQAENLADFYEYCKGLDLARNFQFPILRQPPPSFVATMEEYIKEAPTSGNVKRLEYKKDDESPKEEPEQKETEKPEVIEEQAEEVKKEEPVDKDQTEETELPPLISTDGDDDLLGLNEINPKAQELEDSNALALAILPPGGNNSNNLALTDISGTTGWELALVTTPSNHMSQAPDRKMAGGFDKLLLDSLYEDENARRQLQLQNAGYGYGATTMHNPFDNYNQHDPFAVSNIVAPPSNVQMALMTQQQMMFQQQQQHQQHNMMMVPYQQQHPHTQYPQQMSVTSYSNPFGDPLPVPSYSYSSLHHHQGNYNIM 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05251 578 SUPERFAMILY GAT-like domain 180 309 - -
Trre15g05251 578 Gene3D ANTH domain 173 326 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Trre15g05251 578 Gene3D - 6 161 IPR008942 -
Trre15g05251 578 MobiDBLite consensus disorder prediction 317 364 - -
Trre15g05251 578 MobiDBLite consensus disorder prediction 317 381 - -
Trre15g05251 578 ProSiteProfiles ENTH domain profile. 24 161 IPR013809 -
Trre15g05251 578 FunFam Clathrin assembly protein AP180 6 161 - -
Trre15g05251 578 SMART enth_2 30 161 IPR013809 -
Trre15g05251 578 FunFam Putative clathrin assembly protein 173 321 - -
Trre15g05251 578 Pfam ANTH domain 31 309 IPR011417 GO:0005543
Trre15g05251 578 SUPERFAMILY ENTH/VHS domain 31 161 IPR008942 -
Trre15g05251 578 PANTHER CLATHRIN ASSEMBLY PROTEIN 8 515 IPR045192 GO:0048268|GO:0072583
Trre15g05251 578 CDD ANTH_N 32 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05251 Trre-Chr15 61832282 61836046 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05251 K20044 - gmx:100815975 834.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g05251 15 61832282 61836046 Trre15g05251 15 61832282 61836046 ECH
Trre15g05251 15 61832282 61836046 Trre3g02280 3 20912120 20916527 PCT