Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02270 ATGCATCGAGCTGTGGTGGATCCATTGTTGTCACCAATTTTGAGTTCAGACTCTGTTTCTCGGAGATCGGAGCCAGAAAAAAGGAGATTTGGTGACCTTAGAGGGTTGCAGTGGCGTATAAATCTTGGGGTTTTACCTTCTTCTTCTGCAGCTTCCATTGATGATCTTCGTCGAGTTACTGCTGATTGTAGAAGAAGGTATGCCAGGTTGAGAAGGCACCTCCTTGTTGAACCACCTGTTCCAAAGAATGGAACAAATTCATCGAACCTTGAAATGGACAATCCACTTTCACAAAATCCAGATAGTACATGGAGTCGCTTTTTCCGCAATGCTGAACTCGAGAGATTGGTTGATCAGGATTTATCACGTTTATACCCTGAACATGGCAGTTTTTTCCAAACACCAGGATGCCAGGGCATGTTGAGACGCATTTTATTGCTATGGTGTCTCAAGTACCCAGAATGTGGTTATCGACAAGGAATGCATGAATTACTTGCTCCTCTACTTTATGTTCTCCAAGTTGATTTGGAGCGTCTCTCAGAAGTACGGAAGCTTTATGAGGATCACTTTACAGACAGATTTGATGGTCTTTTATGTCAAGAGAATGATCTTACTTACAGCTTTGATTTTAGGAAATCTCCTGACATGATGGAAGATGAAATTGGCTCCCACGGAAATGCAATAAAAGCCAATAGTACTGACGAACTTGAATCTGAGATTCAGTCCATTGTATTACTAAGTGATGCATATGGAGCTGAAGGTGAACTCGGCATTGTATTATCTGAGAAATTCATGGAACATGATGCTTACTGTATGTTTGATGCTTTAATGAAGGGGGCCAATGGTTCAGTTGCAATGGCCGATTTCTTCTCTTCCTCTCCTGTAGCTGGCTCCCATACTGGCTTGCCTCCTGTGATTGAAGCTTCGATGGCATTGTATCATTTGTTATCTCTTGCTGATTCTTCTCTTCATAGCCACCTTTTGGATCTTGGGGTTGAACCGCAGTACTTTTATCTTCGATGGTTGCGAGTTTTATTTGGACGAGAATTTTCACTTGACAAACTATTAATCATTTGGGATGAGATCTTTGCATCAGATAACAGCAAAGTGGAAAATAGTTCTGATGACAACATAGATTACGGGTTCAGGATCTTACATTCTCCTCGTGGAGCATTTATATCAGCTATTGCTGTAGCAATGTTACTTCATTTAAGATCTTCTCTACTTGCAACTGAAAACCCTACAACCTGTCTCCAAAGACTACTAAACTTCCCCGAAAATATTACCATCGAAAAACTACTAGAGAAGGCTAAATCCTTGCAGGATCTTGCTTTAAGTATTGATATTTCGTCCTCATCGCTTTTGCTTGTAGGGTCTCATTACCAAAGTAAAATGACGTCTACGAGATCCGCGATCCCTCCATCTGAATCTGTGTCGCCAAAAACTCCTCTGAATTTCGTACCTGATAGCTACTGGGAAGAAAAGTGGAGAGTTGCTCAAAAGGCCGAAGAACGTAAGAAAGATGTTGTAGAAAATCAGGTTCCAACTCGGAAGAAAGGATGGACAGAAAAGATGAAATTACGTTTGAGAAGAACGGAATCTGACCCGCCTCCATCAAGGATTCTAAGCGGACAAAGGGGATCTAAGCCATCATTTAGGCGTAGTCTGTTAGAAGATCTGCGTAAAGCACTTGGCGCTGAGGAAAACACAGAACATGAGCAGCGTCATGATGAAATCTTAAGCGAGCAGGATAATATTTCTGAAGCAGTTGAAATAGAGCAACAAGATAGTGGCTGTAACAGCGACAACAATTCTGATGATAAATGTCCAAGTGGAAATTCTGGACATGAGGAAGATTCGTCTATATATTCCGACTCCACTAGTCCTCCTAATGAGGCCAATGATCATGAAATCGCCTCAGAAAAAAATAGTGCTACATCTTTTTTATCCCTAGATGAATGTAATGAAATTTTAGACACTAGTCCTATTGATCCTCCCCTTCCAATCTCTGATCCACCTGTGAATATGCATCTGGCGCCAGTGTGCAATAATGATGATCAAGGAAATAATCAGGACAATGAAACGCCAGTGTGCGATACCAGTCCCAATGATTCACCCTTACCATTGCCAATCTCCGATCCTTCTCAGAACAACTTAGCTCAGACATCGGAGTGCAATAATGACGGTGAAGGAAGTTCAACCACGCAACCTAAAGAGAGAAAACAGAATAAATTCCAGTGGTTTTGGAAGTTTGGACGGAACACTGTTGAGGCTATCTCCGAGAAAGTAGGAGGTGGTGCTGCCGAGGCTACGAAGTCTGCCAACAGTGTTAGTAATCAAAGCAATTCATCGCCGTCAGCCTCACCAGCTGCTGATGGACATTGTAGTTCTGTTAGTTGCAGAGGAGATTCTGTTGACCAAAATGTGATGGGCACTTTGAAGAACATTGGGCAGTCTATGCTTGACCATATTCAGGTGATTGAATCTGTTTTCCAGCAGGATCGGGGCCAGGGAGCGTCATCGGATAATTTATCTAAGAATGTTCTTGTTGGAAAAGGGCAGGTAACTGCAATGACAGCTCTTAAGGAGCTTCGGAAAATCAGCAATCTTTTGTCTGAGATGTGA 2625 0.4221 MHRAVVDPLLSPILSSDSVSRRSEPEKRRFGDLRGLQWRINLGVLPSSSAASIDDLRRVTADCRRRYARLRRHLLVEPPVPKNGTNSSNLEMDNPLSQNPDSTWSRFFRNAELERLVDQDLSRLYPEHGSFFQTPGCQGMLRRILLLWCLKYPECGYRQGMHELLAPLLYVLQVDLERLSEVRKLYEDHFTDRFDGLLCQENDLTYSFDFRKSPDMMEDEIGSHGNAIKANSTDELESEIQSIVLLSDAYGAEGELGIVLSEKFMEHDAYCMFDALMKGANGSVAMADFFSSSPVAGSHTGLPPVIEASMALYHLLSLADSSLHSHLLDLGVEPQYFYLRWLRVLFGREFSLDKLLIIWDEIFASDNSKVENSSDDNIDYGFRILHSPRGAFISAIAVAMLLHLRSSLLATENPTTCLQRLLNFPENITIEKLLEKAKSLQDLALSIDISSSSLLLVGSHYQSKMTSTRSAIPPSESVSPKTPLNFVPDSYWEEKWRVAQKAEERKKDVVENQVPTRKKGWTEKMKLRLRRTESDPPPSRILSGQRGSKPSFRRSLLEDLRKALGAEENTEHEQRHDEILSEQDNISEAVEIEQQDSGCNSDNNSDDKCPSGNSGHEEDSSIYSDSTSPPNEANDHEIASEKNSATSFLSLDECNEILDTSPIDPPLPISDPPVNMHLAPVCNNDDQGNNQDNETPVCDTSPNDSPLPLPISDPSQNNLAQTSECNNDGEGSSTTQPKERKQNKFQWFWKFGRNTVEAISEKVGGGAAEATKSANSVSNQSNSSPSASPAADGHCSSVSCRGDSVDQNVMGTLKNIGQSMLDHIQVIESVFQQDRGQGASSDNLSKNVLVGKGQVTAMTALKELRKISNLLSEM 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02270 874 MobiDBLite consensus disorder prediction 682 741 - -
Trre3g02270 874 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 97 282 - -
Trre3g02270 874 MobiDBLite consensus disorder prediction 770 799 - -
Trre3g02270 874 MobiDBLite consensus disorder prediction 659 741 - -
Trre3g02270 874 MobiDBLite consensus disorder prediction 503 553 - -
Trre3g02270 874 ProSiteProfiles TBC/rab GAP domain profile. 28 366 IPR000195 -
Trre3g02270 874 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 302 441 IPR035969 -
Trre3g02270 874 SMART tbc_4 20 412 IPR000195 -
Trre3g02270 874 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 32 326 IPR035969 -
Trre3g02270 874 MobiDBLite consensus disorder prediction 771 793 - -
Trre3g02270 874 MobiDBLite consensus disorder prediction 593 645 - -
Trre3g02270 874 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 23 437 - -
Trre3g02270 874 Pfam Rab-GTPase-TBC domain 265 366 IPR000195 -
Trre3g02270 874 Pfam Rab-GTPase-TBC domain 113 173 IPR000195 -
Trre3g02270 874 Gene3D - 305 447 - -
Trre3g02270 874 FunFam TBC1 domain family member 5 305 449 - -
Trre3g02270 874 MobiDBLite consensus disorder prediction 503 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02270 Trre-Chr3 20858803 20863520 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02270 K18469 - gmx:100812967 1126.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g02270 3 20858803 20863520 Trre3g02270 3 20858803 20863520 ECH
Trre15g05252 15 61836778 61841136 Trre3g02270 3 20858803 20863520 PCT