Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05252 ATGCCACCGGCTCTATTGGATCCGCCATTGTCAGAAACATCATTGGTGCCGTCTTTAATCTCCGGCACCATTTCTCAGGAACCGGTGCCGGAAAGTCGGTTATTTGAGGATCTTAGAGGTTTACAATGGCGTATAAATCTTGGGGTTTTGCCACCTTGTTCTTCTTTAACTTCCATTGATGATCTTCGTCGTGCCACCGCTAATTCTCGACGGAGGTATGCTAGTTTAAGAGGGCGGCTCCTAGTTGATCCCCACATTACAAAGGATGGAAGTAGTTCACCACCCAATCTTGTCATGGACAATCCACTTTCACAAAATCCAAACAGTACATGGGGTCGCTTTTTTCACAATGCGGAGCTAGAGAGGATGGTGGATCAGGATTTATCACGTTTATACCCAGAACATGGAAACTATTTCCAGACAAAGGGGTGTCAAGGCATATTAAGACGTATTTTATTATTATGGTGTCTTAAGCACCCCGAGTGTGGTTATAGACAAGGAATGCACGAGTTACTTGCTCCTTTGCTTTATGTTCTCCAAGTTGATGTAGAGCACCATTCGGAAGTTCGAAAACTTCATGAAGATCACTTCACAGACAGATTTGATGGTCTCTTTTGTCAAGAGAATGATATTACTTACAGCTTTGATTTTATAAAATCTCCAGACTTGACAAATGATGAAATTGGCTCCCATGGAGAAGGAGTAAAAATTAAGAGTCTTGACGAGCTTGATCCTAAGATACAGACCACTGTATTGCTAAGTGATGCTTATGGGGCTGAAGGTGAATTGGGCATTGTTTTATCTGAGAAATTTATCGAGCATGATGCTTACTGTATGTTTGAAGCTTTAATGAATGGGGCTCACAGATCAGTTGCAATGGCCGATTTTTTCTCTTATTCTCCTGTTGCCGGGTCCCATACTGGTTTGCCACCTGTAATTGAAGCTTCTGCTGCACTATATCATTTGTTGTTTCATGTGGATTCATCTCTATATAGCCATCTTGTTGATCTTGGGGTTGAACCACAATACTTTGCTCTCCGCTGGTTAAGAGTTTTATTTGGACGGGAATTTTCACTCGACAACCTCTTGATCATCTGGGATGAAATCTTTTTATCAGATAATAGTGAAATGGAAAAGCATGTGGAGGACAATGCAGACACTGGCTTTAGGATCTTTCATTCATCTCGTGGACGATTTATCTTAGCTATTGCCGTGGCAATGTTACTTCATATAAGATCTTCACTGCTTGCGACTGAAAATCCTACAACCTGTCTCCAGAGATTATTAAGCTTTCCTGAGGACACAGACATTAAAAAACTAATAGAGAAAGCTAAATCCTTGCAGACTCTTGCATTAAATACTGAAATTTCATCCTCGGCTCCTATGCTTGTAGAGTATAACAAGGGTAAATCAGTTATTGCAAGATCTATTAGCATTCCATGTGAATCAGGTTCACCAAAAACTCCTAATAGTTTATTACCTGATAATAGCTACTGGGAAGAAAAGTGGAGAGTTGTTCACAGTGCTGAAGAACTTAAACAAGATGGAGTAGAAAAGCATGTTCCATCTCAGAAAAAGAGATGGACAGAAAAGGTAAAGTTAAGTTTCAAAAGAACAGAATCCGAACCATCTTCCTCAATGATTAAAAGTGGGAAAAAGGAATCTAAGGCATCTATTAAGCGCAGTTTGTTAGAAGATCTTTCCAAGGAACTTGGGTCAGAAGGAGATACAGAAAAACTTGACTGTCATGAAATCTTATGTCAGCAGGATAATCATTCAGTAGCAGTTGAAGTGGGGCAACAAGATGATGGTTCTGATGACAGCAACAAATATGGTGCTGATGATAGATGTCTAAGTAAAAACATTAGCAGTGAGAACTCATTTAACCCAGCTAGTCCTCCTAATGAGATCAAAGATCTTGAAAATGAAAATATCTCACAGAAAAGTAGTGGTGGGTTGAATTTATTTGTTGATGAAATTAATGAAATTTCACATAGTAGTCCCATTGATTCGCCTCTTCCAATCTCCGATCATCCTGAGAATAACCTATCTCCCGCGCCAGGGCGGAATAATGATTCCACGGGAAATTTGGCAACAATTTCTAGGGATATAAAACTGAATAAATTCCAGTGGCTTTGGAAGTTTGGCCGTAATAGGGGCGAGTTAATGTCTGAGAAAAGAGGTCGTGCTTCTGAGCCTGTAAAACCGACCAACAATTTTAACAATAATCAAAGTAACACAACACCCTCTTCTACAGCTGGTGAGCATTGCAGTTCTGTTAATTGTAAAGGAGATTCTACAGACCAGAATATGATGGGAACTTTGAGGAATATTGGGCAGTCCATGCTTGAGCATATTCAGGTGATTGAGTCTGCTTTCCAACACGAGCGTGGTCAGGGAGCTTCATTGGATAATAATATGTCTAAAAATGTTTTGGTTGGCAAAGGGCACGTTACTGCCATGTCAGCTCTCACGGAGCTTCGTAAAATTAGCAACCTTTTGTCTGAGATGTGA 2514 0.4025 MPPALLDPPLSETSLVPSLISGTISQEPVPESRLFEDLRGLQWRINLGVLPPCSSLTSIDDLRRATANSRRRYASLRGRLLVDPHITKDGSSSPPNLVMDNPLSQNPNSTWGRFFHNAELERMVDQDLSRLYPEHGNYFQTKGCQGILRRILLLWCLKHPECGYRQGMHELLAPLLYVLQVDVEHHSEVRKLHEDHFTDRFDGLFCQENDITYSFDFIKSPDLTNDEIGSHGEGVKIKSLDELDPKIQTTVLLSDAYGAEGELGIVLSEKFIEHDAYCMFEALMNGAHRSVAMADFFSYSPVAGSHTGLPPVIEASAALYHLLFHVDSSLYSHLVDLGVEPQYFALRWLRVLFGREFSLDNLLIIWDEIFLSDNSEMEKHVEDNADTGFRIFHSSRGRFILAIAVAMLLHIRSSLLATENPTTCLQRLLSFPEDTDIKKLIEKAKSLQTLALNTEISSSAPMLVEYNKGKSVIARSISIPCESGSPKTPNSLLPDNSYWEEKWRVVHSAEELKQDGVEKHVPSQKKRWTEKVKLSFKRTESEPSSSMIKSGKKESKASIKRSLLEDLSKELGSEGDTEKLDCHEILCQQDNHSVAVEVGQQDDGSDDSNKYGADDRCLSKNISSENSFNPASPPNEIKDLENENISQKSSGGLNLFVDEINEISHSSPIDSPLPISDHPENNLSPAPGRNNDSTGNLATISRDIKLNKFQWLWKFGRNRGELMSEKRGRASEPVKPTNNFNNNQSNTTPSSTAGEHCSSVNCKGDSTDQNMMGTLRNIGQSMLEHIQVIESAFQHERGQGASLDNNMSKNVLVGKGHVTAMSALTELRKISNLLSEM 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05252 837 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 36 444 - -
Trre15g05252 837 MobiDBLite consensus disorder prediction 734 756 - -
Trre15g05252 837 MobiDBLite consensus disorder prediction 598 638 - -
Trre15g05252 837 MobiDBLite consensus disorder prediction 724 756 - -
Trre15g05252 837 FunFam TBC1 domain family member 5 312 456 - -
Trre15g05252 837 MobiDBLite consensus disorder prediction 667 696 - -
Trre15g05252 837 MobiDBLite consensus disorder prediction 619 633 - -
Trre15g05252 837 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 37 333 IPR035969 -
Trre15g05252 837 Pfam Rab-GTPase-TBC domain 121 180 IPR000195 -
Trre15g05252 837 Pfam Rab-GTPase-TBC domain 273 374 IPR000195 -
Trre15g05252 837 ProSiteProfiles TBC/rab GAP domain profile. 33 373 IPR000195 -
Trre15g05252 837 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 106 291 - -
Trre15g05252 837 SMART tbc_4 25 419 IPR000195 -
Trre15g05252 837 Gene3D - 312 457 - -
Trre15g05252 837 MobiDBLite consensus disorder prediction 532 555 - -
Trre15g05252 837 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 308 448 IPR035969 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05252 Trre-Chr15 61836778 61841136 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05252 K18469 - gmx:100816501 1174.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g05252 15 61836778 61841136 Trre15g05252 15 61836778 61841136 ECH
Trre15g05252 15 61836778 61841136 Trre3g02270 3 20858803 20863520 PCT