Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02250 ATGGAAAACAAGGAAGAGAAAAAAATTATGGTGACTAATTCACTACTACAACTTGCAAATGAATTAGATTCAGAAGAGGGTTACAAGGCCCCTAATCTTTTGCAACGCTTATTTAGTTTATTCAAGAATGTACGTCTAGGATCTGATATCACACACTTCCAGATGCCACTACTATTTAACGTTCCAAAATCACAACTTCAATTCACCGGTGAAGCAATATACTGCAGTGCTTCAGATTTGCTAAGCACATGCAACAGAGAACAAAATCCAGTGGATAGGTTCATATATGTTGTAGCATGGTTCATATCTACTAGACGCCCTGTACCTTTTGGGGTTGCTCCATACAATCCAATTCTTGGTGAGACACACCATGTTTCAAAGGGAAATCTTAATGTGTTAGTTGAACAGGTGTCACACCACCCTCCAGTAACTGCCGTTCATGCAACTGATGACAAGGAAAACATTGAAATCATATGGTGTCAGCAACCTGTTCCTAAATTTTATGGCACATCAGTTGAAGGTAAAATTAATGGTAAAGGTAAACTGAAGCTCTTAAATCATGGAGAAACATATGAGTTGAATTCTCCGAACCTTTTATACAGAAATCTTCCAGTTCCTGGTGTTGATTGGGTTGGTACAACTAATCTAAGATGCTTAGAGACAGGCCTAATAGCTGAGTTATCCTACAAATCAAGTCATTCTTATCTAGGACTTGGTGGAAATCATAAAGTAATTAAAGGGAAGATCTTTGACTCTACATCTTCTAAAGTTATGTATGAAATTGATGGTCAATGGGACAGGACTGTAAAGCTGAAGGATATAATAAATGGGAAAGTAAGAGTGATATATGGTGCAACAAAAGTCAATTCAAGGCTAAAAGTTCCTATTCTCAAGAATGAAGAGAAGATATGTCGAGCTTGA 921 0.3724 MENKEEKKIMVTNSLLQLANELDSEEGYKAPNLLQRLFSLFKNVRLGSDITHFQMPLLFNVPKSQLQFTGEAIYCSASDLLSTCNREQNPVDRFIYVVAWFISTRRPVPFGVAPYNPILGETHHVSKGNLNVLVEQVSHHPPVTAVHATDDKENIEIIWCQQPVPKFYGTSVEGKINGKGKLKLLNHGETYELNSPNLLYRNLPVPGVDWVGTTNLRCLETGLIAELSYKSSHSYLGLGGNHKVIKGKIFDSTSSKVMYEIDGQWDRTVKLKDIINGKVRVIYGATKVNSRLKVPILKNEEKICRA 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02250 306 ProSitePatterns Oxysterol-binding protein family signature. 135 145 IPR018494 -
Trre3g02250 306 Gene3D - 119 297 - -
Trre3g02250 306 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 37 287 IPR000648 GO:0008289
Trre3g02250 306 FunFam Oxysterol-binding protein-related protein 4C 118 296 - -
Trre3g02250 306 Pfam Oxysterol-binding protein 40 274 IPR000648 GO:0008289
Trre3g02250 306 SUPERFAMILY Oxysterol-binding protein-like 36 287 IPR037239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02250 Trre-Chr3 20572141 20588679 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02250 K22285 - gmx:100813724 428.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g02250 3 20572141 20588679 Trre3g02250 3 20572141 20588679 ECH
Trre15g05254 15 61874407 61877144 Trre3g02250 3 20572141 20588679 PCT