Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05254 ATGCCTATGGCAACAGAAGGGAAGAGGCATTCAAAAATTTTCCTGACAAAGCCATTCTCATTGGAAATTGAATCAGACTCAGAGCCGACTTACAGTTACAGAGCCCCTAATCTGATCCGTCGCTTGTTAAGTTTGCTTAAGAATGTACGGCCAGGAGCAGATCTCACTAACTTACAGTTGCCACCTCTCTTTTATTTCCCGAAATCACAACTTCAATGCTACGGTGAATCAGTATACAGCACAACTTCAAATTCAAACTTGCTAAGCAAATGCAACAATGAGCAGAGTCCATTGGAAAGGTTAACATCTGTGGTAGCATGGAGCATATCTACCACACGTCCTACTTCTTTTGGAGTTGCTCCTTATAATCCCATTCTTGGAGAGACGCATCATGTTTCCAAGGGCAACCTTAATGTCCTGCTCGAGCAGGTTTCCATCAATCCTCCGGTGTCTGCTCTACATGCAACAGATGACAAGGAAAACATTGAAATGATATGGTGCCAGAAACCTGCTCCAAAGTTCCGCGGTACAAGTATCGAAGCTGAAGTGCATGGAAAAAGGGTGCTAAAGCTTAGAAATCATGGAGAGACATATGAAATGAATTGTCCTCGCCTCTCAATTAGAATTCTTCCGGTTCCAGGAGTTAGTTGGGCTGGCAATGTTAATATACTGTGCAAAGAGACAGGCCTTGTGGCTGAGTTATCCTACAAATCATCGTATTCTTTTCTTGGACTTGGTGGGAATAGTAAGTTGGTCAAAGGGAGGATCCTTGATTCTTCATCATTCAATGTACTATATGAAATTGATGGTCAGTGGGATAGGACTGTTAAAGTGAAGGATATGAGCAGTGGGAAAGTCAAAGTGATATATGATGCTAAAGAAGTAATTTCAGGGCTCAAAACTCCTATTGTCAAGGATGCAGAGGGTGTGTGGCAAACTGAATCAGCCCTTATTTGGGGTGAGTTGACTGAAGCTATTGTTAGTAATGACTGGGAGAAAGCAAAAGAAGCAAAGCAAGGTGTGGAGGAAAGACAAAGGAAGATGTTGAGAGAAAGAGAGACCAAAGGGGAACATTGGACTCCTAAGAATTTTTTGGTGTCTTATAGTAATGAAAGTGGATTAGAGTGTGAATGTTCACCCATTAATAAATGGGTCCCTCCTGCACCTATCATAGCACTGTAA 1182 0.4205 MPMATEGKRHSKIFLTKPFSLEIESDSEPTYSYRAPNLIRRLLSLLKNVRPGADLTNLQLPPLFYFPKSQLQCYGESVYSTTSNSNLLSKCNNEQSPLERLTSVVAWSISTTRPTSFGVAPYNPILGETHHVSKGNLNVLLEQVSINPPVSALHATDDKENIEMIWCQKPAPKFRGTSIEAEVHGKRVLKLRNHGETYEMNCPRLSIRILPVPGVSWAGNVNILCKETGLVAELSYKSSYSFLGLGGNSKLVKGRILDSSSFNVLYEIDGQWDRTVKVKDMSSGKVKVIYDAKEVISGLKTPIVKDAEGVWQTESALIWGELTEAIVSNDWEKAKEAKQGVEERQRKMLRERETKGEHWTPKNFLVSYSNESGLECECSPINKWVPPAPIIAL 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05254 393 FunFam Oxysterol-binding protein-related protein 4C 125 303 - -
Trre15g05254 393 Pfam Oxysterol-binding protein 44 319 IPR000648 GO:0008289
Trre15g05254 393 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 42 364 IPR000648 GO:0008289
Trre15g05254 393 SUPERFAMILY Oxysterol-binding protein-like 42 376 IPR037239 -
Trre15g05254 393 Gene3D - 311 382 - -
Trre15g05254 393 Gene3D - 126 306 - -
Trre15g05254 393 FunFam Oxysterol-binding protein-related protein 4B 311 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05254 Trre-Chr15 61874407 61877144 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05254 K22285 - gmx:100813302 605.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g05254 15 61874407 61877144 Trre3g02250 3 20572141 20588679 PCT