Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02191 ATGGCAGTTTCCATGAGAGATTTGGATCCAGTTTTCCAGGGAGCTGGACAAAAGGCTGGACTTGAAATATGGCGTATTGAGAATTTTAATCCAGCACCTGTCCCAAAGTCCTCATATGGAAAATTTTTCACTGGGGATTCCTATGTGATCTTAAAGACAACCGCACCAAAAAGTGGTGCTCTGCGTCATGACATCCATTACTGGATTGGTAAAGACACCAGTCAGGATGAAGCTGGTGTTGCAGCCATCAAGACAGTTGAGCTGGATGCAGCTCTTGGAGGACGTGCTGTTCAGTATCGGGAAGTACAGGGCCATGAAACTGAAAAGTTTCTGTCTTATTTCAAGCCTTGTATTATACCTCAAGAAGGTGGTGTTGCTTCTGGTTTTAAACATGCCGAGGCTGAAAAGCACAAGACACGGTTGTTTGTATGCAGAGGGAAACATGTTGTACATGTCAAAGAGGTTCCTTTTGCTCGATCTTCACTCAACCATGATGATATTTTTGTTCTTGACACTGAGTCAAAAATCTTCCAATTTAATGGTTCCAATTCATCTATTCAAGAAAGGGCTAAAGCTTTGGAAGTTGTACAGCATATTAAGGATACCTACCATGAGGGGAAATGCGAGATAGCTGCTATCGAGGATGGAAAGTTAATGGCTGATCCTGAAACTGGGGAATTCTGGGGTTTCTTTGGCGGATTCGCTCCACTTCCGCGAAAAACAGCCAGTGATAATGATAAGTCTGCTGATTCTCGTTCTCCAAAACTGCTTCGTGTTGAAAAGGGACAGGCGGAACCTGTTGAGGCCGATTCTTTAAAAAGGGAGTTTCTAGACACAAATAAATGTTACATTCTGGATTGTGGGTTGGAAATGTTTGTCTGGATGGGAAGAAACACCTCTCTTGATGAAAGAAAAAGTGCAAGTGGAGTTGCTGATGAGTTAGTCAGTGGCATTGATCAACTTAAACCCCAAATAATTCGAGTAATTGAAGGATTTGAAACTGTGCTGTTTAAGTCCAAGTTTGAGTCCTGGCCTCAGACCCCTGATGTAACTGTATCTGAAGATGGACGCGGCAAGGTAGCAGCACTTCTGAAACGTCAAGGAGTAAATGTCAAGGGTCTGTTGAAAGCTGATGCAGTAAAAGAAGAACCTCAACCTTACATTGATTGCACTGGGCATTTGCAGGTTTGGCGTGTGAACGGTCAGGAAAAGATTCTTCTCCCAGCTTCTGATCAATCAAAATTTTATAGTGGAGATTGCTTCATCTTTCAATATTCATATCCTGGAGAAGATAAGGATGATTGTCTTATTGGAACGTGGATAGGAAAGAACAGTGTTGAGGAAGAAAGGGCTTCAGCTAATTCACTGGCTAGCAAAATGGTCGAGTCAATGAAGTTTATGGCTTCCCAGGCTCGTATATATGAAGGCAATGAACCAATTCAATTTCATTCTATCCTACAAACCTTCATTGTTTTTAAGGGCGGGCTAAGTGATGGATACAAGACTTACATTGCGGAAAAGGAAATTCCAGATGATACATACACTGAGGACAGTTTAGGATTATTCCGAATCCAAGGTTCTGGACCAGACAATATGCAAGCTATACAAGTTGAACCGGTTGCTTCTTCCTTGAATTCCTCTTATTGCTATATACTTCATAATGGGTCTGCGGTCTTTACTTGGTCTGGAAGCAATACAAGTGCAGAAAACCAGGAACTTGTAGAGAGGATGCTGGATTTGATAAAGCCAAATTTACAATCAAAACCACAAAGGGAAGGTACAGAATCTGAACAATTTTGGGATTTGTTGGGAGGAAAATCAGAATATTCCAGTCAAAAGATTAGTAGGGAGCCTGAAAGTGATCCACACCTATTTTGTTGCAACTTCTCGAATGGTAAGGGTTCATTTTCTTGTTTGCTGGATATTTACAGACCCGCTTTCCCTTCAAAGGCAAACAGCTGA 1962 0.4174 MAVSMRDLDPVFQGAGQKAGLEIWRIENFNPAPVPKSSYGKFFTGDSYVILKTTAPKSGALRHDIHYWIGKDTSQDEAGVAAIKTVELDAALGGRAVQYREVQGHETEKFLSYFKPCIIPQEGGVASGFKHAEAEKHKTRLFVCRGKHVVHVKEVPFARSSLNHDDIFVLDTESKIFQFNGSNSSIQERAKALEVVQHIKDTYHEGKCEIAAIEDGKLMADPETGEFWGFFGGFAPLPRKTASDNDKSADSRSPKLLRVEKGQAEPVEADSLKREFLDTNKCYILDCGLEMFVWMGRNTSLDERKSASGVADELVSGIDQLKPQIIRVIEGFETVLFKSKFESWPQTPDVTVSEDGRGKVAALLKRQGVNVKGLLKADAVKEEPQPYIDCTGHLQVWRVNGQEKILLPASDQSKFYSGDCFIFQYSYPGEDKDDCLIGTWIGKNSVEEERASANSLASKMVESMKFMASQARIYEGNEPIQFHSILQTFIVFKGGLSDGYKTYIAEKEIPDDTYTEDSLGLFRIQGSGPDNMQAIQVEPVASSLNSSYCYILHNGSAVFTWSGSNTSAENQELVERMLDLIKPNLQSKPQREGTESEQFWDLLGGKSEYSSQKISREPESDPHLFCCNFSNGKGSFSCLLDIYRPAFPSKANS 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02191 653 FunFam Villin-like 1 132 247 - -
Trre3g02191 653 SMART VILL_6 254 344 IPR007122 GO:0051015
Trre3g02191 653 SMART VILL_6 137 234 IPR007122 GO:0051015
Trre3g02191 653 SMART VILL_6 392 489 IPR007122 GO:0051015
Trre3g02191 653 SMART VILL_6 519 606 IPR007122 GO:0051015
Trre3g02191 653 SMART VILL_6 19 117 IPR007122 GO:0051015
Trre3g02191 653 CDD gelsolin_S2_like 138 223 - -
Trre3g02191 653 SUPERFAMILY Actin depolymerizing proteins 129 240 - -
Trre3g02191 653 Gene3D Severin 247 355 IPR029006 -
Trre3g02191 653 CDD gelsolin_S3_like 254 343 - -
Trre3g02191 653 CDD gelsolin_S1_like 12 124 - -
Trre3g02191 653 PANTHER VILLIN 9 633 IPR007122 GO:0051015
Trre3g02191 653 FunFam Villin-4 385 519 - -
Trre3g02191 653 CDD gelsolin_S4_like 386 485 - -
Trre3g02191 653 SUPERFAMILY Actin depolymerizing proteins 382 528 - -
Trre3g02191 653 CDD gelsolin_S5_like 521 608 - -
Trre3g02191 653 PRINTS Gelsolin family signature 592 611 IPR007122 GO:0051015
Trre3g02191 653 PRINTS Gelsolin family signature 411 427 IPR007122 GO:0051015
Trre3g02191 653 PRINTS Gelsolin family signature 436 454 IPR007122 GO:0051015
Trre3g02191 653 PRINTS Gelsolin family signature 532 552 IPR007122 GO:0051015
Trre3g02191 653 PRINTS Gelsolin family signature 469 489 IPR007122 GO:0051015
Trre3g02191 653 PRINTS Gelsolin family signature 323 344 IPR007122 GO:0051015
Trre3g02191 653 Gene3D Severin 133 246 IPR029006 -
Trre3g02191 653 Gene3D Severin 379 522 IPR029006 -
Trre3g02191 653 MobiDBLite consensus disorder prediction 243 262 - -
Trre3g02191 653 FunFam Gelsolin 6 131 - -
Trre3g02191 653 Gene3D Severin 7 132 IPR029006 -
Trre3g02191 653 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 255 427 IPR036180 -
Trre3g02191 653 FunFam Gelsolin 520 612 - -
Trre3g02191 653 MobiDBLite consensus disorder prediction 241 262 - -
Trre3g02191 653 SUPERFAMILY Actin depolymerizing proteins 9 147 - -
Trre3g02191 653 Pfam Gelsolin repeat 150 216 IPR007123 -
Trre3g02191 653 Pfam Gelsolin repeat 29 111 IPR007123 -
Trre3g02191 653 Pfam Gelsolin repeat 410 481 IPR007123 -
Trre3g02191 653 Pfam Gelsolin repeat 266 334 IPR007123 -
Trre3g02191 653 SUPERFAMILY Actin depolymerizing proteins 510 623 - -
Trre3g02191 653 Gene3D Severin 523 613 IPR029006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02191 Trre-Chr3 19673624 19680070 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02191 - - gmx:100809968 1182.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g02191 3 19673624 19680070 Trre15g05266 15 62012962 62020186 PCT