Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05266 ATGGGTGTTTCAATGAGAGATTTGGATCCAGCTTTCAAGGGAGCTGGACAAAAAGATGGACTTGAAATATGGCGTATTGAGAATTTCAATCCAATTCCCATTCCTCAGTCTTCTTATGGAAAGTTTTTCACCGGAGACTCGTATATAATCTTGAAGACAACGGCATCAAAAAGTGGTGCTCTGCGCCACGATATTCATTATTGGCTTGGTAAAGATACCAGTCAAGATGAAGCTGGTGCTGCAGCCATCAAAACAGTTGAGTTGGATGCAGTTCTAGGAGGACGAGCTGTTCAGTATCGTGAAGTGCAGGGTCGTGAAACAGAGAAGTTCTTATCATATTTCAAACCATGTATTATACCACAAGAAGGTGGCGCTGCCTCTGGTTTTAAGCATGTTGAAGCTGAAGAACATAAGACACGGTTGTTTATATGCAAAGGGAAACATGTTGTGAACGTTTCTTTTGCTCGATCTTCGCTCAACCATGATGATATTTTTATTCTGGATACCGAGTCAAAAATCTTCCAATTTAATGGTTCCAATTCATGTATTCAAGAAAGGGCTAAAGCATTGGAAGTTGTTCAATATATTAAGGATACCTACCATGATGGCAAATGTGAAGTGGCTTCTATTGAGGATGGAAGGTTGATGGCTGACTCTGAAGCTGGAGAATTTTGGGCTTTATTTGGTGGTTTTGCTCCTCTTCCAAGAAAAACAGTCAGTGATGATGATAAGACAATTGATTCTCATCCTCCAAAGTTGCTTTGTGTTGAGAACGGGAAGGCAGAGCCTATTGAAACCGATTCTTTGACAAAGGAATTGCTGGACACCAACAAATGCTATATTTTAGATTGTGGGTTGGAGGTGTTTGTTTGGCTGGGAAGAAATACATCTCTCGATGAAAGGAAACGCGCAAGTGGAGCTACAGATGAACTAGTCAGTAGCACCAATCGACCAAAATCCCAGATAATCCGCGTGATTGAAGGATTTGAAACAGTGATGTTCAGGTCCAAATTCGACTCTTGGCCTCAAGCAACTAATGTAACAATGTCTGAAGATGGTCGTGGCAAGGTAGCAGCACTTCTTAAACGTCAAGGATTAGATGTTAAGGGCCTCTTGAAAGCTGATCCAGTAAAAGAAGAACCTCAATCTTATATCGATTGCACAGGACATTTACAGGTTTGGCGTGTGAATGGTCAAGAAAAAAATCTTCTTGCAGCCAATGACCAGTCAAAATTTTATAGCGGAGATTGCTACATCTTTCAGTATGCATATCCTGGAGAAGACAGGGAGGAACATCTTATTGGAACATGGATTGGAAATAACAGTGTTGAGGAAGAAAGAGCTTCAGCTCTTTTACTAGCAAGCAAAATGGTCGAGACAATGAAGTTTATTCCATCCATGGCTCGTATTTATGAAGGCAGTGAAACAATTCAATTTCATTCCATCCTCCAAAGCTTGATTGTTTTTAAGGGTGGACTTAGTGATGCATACAAGAATTACATTGTGGAGAAGGAAATTCCAGATGAGACGTACAAGGAGGATGGTGTTGCATTATTCCGCATACAAGGCTCTGGACCAGACAATATGCAAGCTATACAAGTTGACCCAGTTGCTTCCTCCATGAATTCCTCTTATTGCTACGTACTTCATAATGAGTCCATTGCTTTTACTTGGTCTGGAAATCTTACGACTTCAGATGACCAAGAACTTGTCGAGAGAATGCTGGATTTAATTAAGCCGGATTTACTATGCAGACCACAAAAGGAAGGTGCAGAATCTGAACAGTTTTGGGAATTGTTAGGAGGAAAAACAGAATATCCCAGTCAAAAGATTGTGAGGGAAGCTGAAAATGATCCCCACCTATTTTCTTGCAAATACTCAGAAGGTAAGGACCAATTTCTTGTTAGCCGGGTGGTAGAGGTACACAATTTTTCCCAGGATGATTTGATGACAGAAGATATTTTCGTCTTGGATTGTCACTCTGAAATCTTCGTGTGGGTTGGCCAGCAGGTTGACCTCAAAAAAAGAATGCTAGCTCTACCAATTGGTGAGAAATTTCTTGAGCAGGATTTTCTTCTAGAAAAAATTTCCCCTTTTACTCCAATGTATATTGTCATGGAAGGCAGTGAGCCGTCTTTCTTCACTCGCTTCTTTAAATGGGATTCTGCAAAACCTGCAATGCTGGGAAACTCATTTCAAAGGAAGCTTGCAATCATAAAAAATGGGGGTACTCCACCTTTGATTAAACCCAAAAGAAGAGCATCTGTATCTTATGGGGGAAGGTCTGGCGGTTTACCAGAGAAATCCCAGCGCTCGCGCAGTATGTCTGTTAGTCCTGACCGTGTTCGTGTCAGAGGAAGATCTCCGGCCTTCAATGCATTGGCAGCTAATTTTGAGAACTCAAATGTTAGAAACCTTTCAACTCCACCTCCAATGATTAGAAAACTGTACCCAAAATCTGTGACACCAGATTCATCATCAGCGGCATCTAAATCATCATCCATATCTCGCCTTACCTCTACTTTTGAACGACCATCAGCACGAGACAGTTTGATTCCTCGGTCACTTAAAGGAAGTACAGATACCTCCAAATCAAACCGCGAGGCAAATAGTGATAACGAGAATCCTACGAGCAGCAGAGAAGAATCTAACACTATACAGGAAGATGCGAAAGAGGGTGAAGCTGAAGATAATGAAGGTCTTCCAGTTTACCCATATGAACGTGTTAACACAGCATCTGAAGATCCTATGCCAGACATTGACGTGACTAAACGAGAGGCTTATCTGTCACCTGAAGAGTTCAACGAGAGACTGGGGATGACTAGGACTGAATTTTACAAGTTGCCAAAATGGAAACAGAATAAACTCAAAATGGCTGTTCAGTTGTTCTGA 2892 0.4136 MGVSMRDLDPAFKGAGQKDGLEIWRIENFNPIPIPQSSYGKFFTGDSYIILKTTASKSGALRHDIHYWLGKDTSQDEAGAAAIKTVELDAVLGGRAVQYREVQGRETEKFLSYFKPCIIPQEGGAASGFKHVEAEEHKTRLFICKGKHVVNVSFARSSLNHDDIFILDTESKIFQFNGSNSCIQERAKALEVVQYIKDTYHDGKCEVASIEDGRLMADSEAGEFWALFGGFAPLPRKTVSDDDKTIDSHPPKLLCVENGKAEPIETDSLTKELLDTNKCYILDCGLEVFVWLGRNTSLDERKRASGATDELVSSTNRPKSQIIRVIEGFETVMFRSKFDSWPQATNVTMSEDGRGKVAALLKRQGLDVKGLLKADPVKEEPQSYIDCTGHLQVWRVNGQEKNLLAANDQSKFYSGDCYIFQYAYPGEDREEHLIGTWIGNNSVEEERASALLLASKMVETMKFIPSMARIYEGSETIQFHSILQSLIVFKGGLSDAYKNYIVEKEIPDETYKEDGVALFRIQGSGPDNMQAIQVDPVASSMNSSYCYVLHNESIAFTWSGNLTTSDDQELVERMLDLIKPDLLCRPQKEGAESEQFWELLGGKTEYPSQKIVREAENDPHLFSCKYSEGKDQFLVSRVVEVHNFSQDDLMTEDIFVLDCHSEIFVWVGQQVDLKKRMLALPIGEKFLEQDFLLEKISPFTPMYIVMEGSEPSFFTRFFKWDSAKPAMLGNSFQRKLAIIKNGGTPPLIKPKRRASVSYGGRSGGLPEKSQRSRSMSVSPDRVRVRGRSPAFNALAANFENSNVRNLSTPPPMIRKLYPKSVTPDSSSAASKSSSISRLTSTFERPSARDSLIPRSLKGSTDTSKSNREANSDNENPTSSREESNTIQEDAKEGEAEDNEGLPVYPYERVNTASEDPMPDIDVTKREAYLSPEEFNERLGMTRTEFYKLPKWKQNKLKMAVQLF 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05266 963 CDD gelsolin_S6_like 618 722 - -
Trre15g05266 963 Gene3D Severin 385 499 IPR029006 -
Trre15g05266 963 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 252 424 IPR036180 -
Trre15g05266 963 Gene3D Severin 514 609 IPR029006 -
Trre15g05266 963 SUPERFAMILY Actin depolymerizing proteins 9 147 - -
Trre15g05266 963 CDD gelsolin_S5_like 514 605 - -
Trre15g05266 963 PRINTS Gelsolin family signature 466 486 IPR007122 GO:0051015
Trre15g05266 963 PRINTS Gelsolin family signature 433 451 IPR007122 GO:0051015
Trre15g05266 963 PRINTS Gelsolin family signature 529 549 IPR007122 GO:0051015
Trre15g05266 963 PRINTS Gelsolin family signature 646 668 IPR007122 GO:0051015
Trre15g05266 963 PRINTS Gelsolin family signature 589 608 IPR007122 GO:0051015
Trre15g05266 963 PRINTS Gelsolin family signature 320 341 IPR007122 GO:0051015
Trre15g05266 963 PRINTS Gelsolin family signature 408 424 IPR007122 GO:0051015
Trre15g05266 963 Gene3D Villin headpiece domain 901 963 IPR036886 GO:0003779|GO:0007010
Trre15g05266 963 SMART VHP_1 928 963 IPR003128 GO:0003779|GO:0007010
Trre15g05266 963 FunFam Gelsolin 6 131 - -
Trre15g05266 963 CDD gelsolin_S1_like 12 124 - -
Trre15g05266 963 SUPERFAMILY Actin depolymerizing proteins 379 525 - -
Trre15g05266 963 Pfam Gelsolin repeat 266 334 IPR007123 -
Trre15g05266 963 Pfam Gelsolin repeat 637 711 IPR007123 -
Trre15g05266 963 Pfam Gelsolin repeat 149 207 IPR007123 -
Trre15g05266 963 Pfam Gelsolin repeat 30 111 IPR007123 -
Trre15g05266 963 MobiDBLite consensus disorder prediction 802 903 - -
Trre15g05266 963 ProSiteProfiles Headpiece (HP) domain profile. 898 963 IPR003128 GO:0003779|GO:0007010
Trre15g05266 963 Gene3D Severin 133 243 IPR029006 -
Trre15g05266 963 Gene3D Severin 610 730 IPR029006 -
Trre15g05266 963 FunFam Villin-4 245 351 - -
Trre15g05266 963 FunFam Gelsolin 515 609 - -
Trre15g05266 963 SUPERFAMILY Actin depolymerizing proteins 592 719 - -
Trre15g05266 963 SUPERFAMILY Actin depolymerizing proteins 129 241 - -
Trre15g05266 963 Gene3D Severin 244 354 IPR029006 -
Trre15g05266 963 CDD gelsolin_S3_like 251 340 - -
Trre15g05266 963 Pfam Villin headpiece domain 928 963 IPR003128 GO:0003779|GO:0007010
Trre15g05266 963 FunFam Villin-like 1 132 244 - -
Trre15g05266 963 SUPERFAMILY VHP, Villin headpiece domain 889 963 IPR036886 GO:0003779|GO:0007010
Trre15g05266 963 CDD gelsolin_S4_like 384 482 - -
Trre15g05266 963 Gene3D Severin 7 132 IPR029006 -
Trre15g05266 963 MobiDBLite consensus disorder prediction 743 784 - -
Trre15g05266 963 SMART VILL_6 251 341 IPR007122 GO:0051015
Trre15g05266 963 SMART VILL_6 516 603 IPR007122 GO:0051015
Trre15g05266 963 SMART VILL_6 620 721 IPR007122 GO:0051015
Trre15g05266 963 SMART VILL_6 389 486 IPR007122 GO:0051015
Trre15g05266 963 SMART VILL_6 19 117 IPR007122 GO:0051015
Trre15g05266 963 SMART VILL_6 137 231 IPR007122 GO:0051015
Trre15g05266 963 PANTHER VILLIN 8 953 IPR007122 GO:0051015
Trre15g05266 963 MobiDBLite consensus disorder prediction 853 883 - -
Trre15g05266 963 MobiDBLite consensus disorder prediction 820 846 - -
Trre15g05266 963 SUPERFAMILY Actin depolymerizing proteins 508 610 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05266 Trre-Chr15 62012962 62020186 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05266 - - gmx:100807762 1605.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g05266 15 62012962 62020186 Trre15g05266 15 62012962 62020186 ECH
Trre3g02191 3 19673624 19680070 Trre15g05266 15 62012962 62020186 PCT