Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01759 ATGGAGGAGGAGGAGACAAGCCAGTGGAAGCAAGCTATGATTAATTCCACAGCTGGGGCTATTTCTGGTGGTATATCAAGAACAGTCACATCACCTCTTGATGTTATTAAGATTAGATTCCAGGTTCAACTAGAGCCCACTTCCTCATGGGCGTCACTGCATCGGGATTTGTCTACACCCTCAAAATATACTGGCATGTTTCAAGCAACTAAAGATATTTTTAGAGAAGAAGGCTTACGGGGTTTTTGGCGGGGTAATGTGCCAGCTTTGCTCATGGTTATGCCATATACGGCTATACAGTTTACTGTTTTACACAAATTCAAGACTTTTGCCTCTGGTTCATCGAAGACAGAGAATCACATTAATCTGAGCCCTTATCTATCCTATGTAAGTGGAGCATTAGCTGGGTGTGCAGCTACTGTAGGATCATATCCATTTGATCTTCTTCGAACTATATTAGCTTCTCAGGGTGAACCAAAGGTTTATCCAAACATGAGGTCAGCAGCCATTGATATTCTTCAGACCCGTGGGTTTCGAGGCTTGTATTCCGGATTGTCACCAACACTAGTTGAGATTATACCTTATGCAGGCCTACAATTTGGCACTTATGATACATTCAAACGATGGGCCATGGCATGGAACCATGTTCAATATTCAATTACTGCTGCAGAAGATAGCCTCTCTAGCTTTCAGCTTTTCCTGTGTGGGCTAGCAGCAGGAACATGTGCCAAGCTTGTCTGTCATCCACTTGATGTAGTCAAGAAAAGATTTCAGATTGAAGGTTTGCAAAGGCATCCAAGATATGGAGCTCGGGTTGAACATCGTGCATATAGTAATATGTTTGACGCCTTGAGACGGATATTACAGAAGGAGGGTTGGGCTGGTCTGTATAAAGGGATTGTTCCATCTACTGTTAAAGCTGCACCGGCTGGTGCTGTAACTTTTGTTGCATATGAATTGACATCAGATTGGCTGGAGTCTATTTTGACTTGA 993 0.43 MEEEETSQWKQAMINSTAGAISGGISRTVTSPLDVIKIRFQVQLEPTSSWASLHRDLSTPSKYTGMFQATKDIFREEGLRGFWRGNVPALLMVMPYTAIQFTVLHKFKTFASGSSKTENHINLSPYLSYVSGALAGCAATVGSYPFDLLRTILASQGEPKVYPNMRSAAIDILQTRGFRGLYSGLSPTLVEIIPYAGLQFGTYDTFKRWAMAWNHVQYSITAAEDSLSSFQLFLCGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPRYGARVEHRAYSNMFDALRRILQKEGWAGLYKGIVPSTVKAAPAGAVTFVAYELTSDWLESILT 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01759 330 PANTHER SOLUTE CARRIER FAMILY 25 8 325 - -
Trre3g01759 330 ProSiteProfiles Solute carrier (Solcar) repeat profile. 123 209 IPR018108 -
Trre3g01759 330 SUPERFAMILY Mitochondrial carrier 9 319 IPR023395 -
Trre3g01759 330 ProSiteProfiles Solute carrier (Solcar) repeat profile. 10 110 IPR018108 -
Trre3g01759 330 ProSiteProfiles Solute carrier (Solcar) repeat profile. 227 324 IPR018108 -
Trre3g01759 330 Gene3D Mitochondrial carrier domain 6 327 IPR023395 -
Trre3g01759 330 PRINTS Mitochondrial carrier protein signature 85 105 IPR002067 GO:0055085
Trre3g01759 330 PRINTS Mitochondrial carrier protein signature 236 258 IPR002067 GO:0055085
Trre3g01759 330 PRINTS Mitochondrial carrier protein signature 28 42 IPR002067 GO:0055085
Trre3g01759 330 PRINTS Mitochondrial carrier protein signature 15 28 IPR002067 GO:0055085
Trre3g01759 330 PRINTS Mitochondrial carrier protein signature 182 200 IPR002067 GO:0055085
Trre3g01759 330 PRINTS Mitochondrial carrier protein signature 138 156 IPR002067 GO:0055085
Trre3g01759 330 FunFam Mitochondrial thiamine pyrophosphate carrier 1 6 327 - -
Trre3g01759 330 Pfam Mitochondrial carrier protein 9 111 IPR018108 -
Trre3g01759 330 Pfam Mitochondrial carrier protein 227 325 IPR018108 -
Trre3g01759 330 Pfam Mitochondrial carrier protein 124 210 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01759 Trre-Chr3 14313885 14319242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01759 2 330 Organic Solute Cotransporters AT3G21390 74.474 0.0 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01759 K15108 - gmx:100783563 587.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g01759 3 14313885 14319242 Trre3g01759 3 14313885 14319242 ECH
Trre15g04821 15 58513664 58516802 Trre3g01759 3 14313885 14319242 PCT