Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04821 ATGGAGGAACCTAGCCAACTGAAACGTGCCATCATTGATTCTTCTGCTGGAGCAATTTCTGGTGGAATTTCTCGTACAGTAACATCACCTCTTGATGTTATTAAGATTAGATTTCAGGTTCAACTTGAACCAACAACTTCATGGGCTTTACTACGCAAAGATTTGGTTGTTACTGCGCCGTCAAAATATACTGGTATGTTTCAGGCCAGCAAAGATATTCTTAGAGAAGAAGGTTTAAAGGGATTTTGGCGGGGGAATGTACCGGCGTTGCTCATGGTTATGCCATATACAGCTATACAATTTACAGTTTTACACAAGTTAAAGACTATTGCATCTGGTTCTTCCAAAACAGAGAATCACACTAATTTGAGCCCGTATCTATCATATGTCAGTGGTGCGCTAGCTGGGTGTGCAGCTACTGTTGGTTCATATCCATTTGATCTTCTCCGAACCATATTAGCTTCTCAAGGCGAGCCAAAGGTATATCCAAACATGAGATCGGCATTCATGGATATCATTCACACTCGTGGATTTCAAGGCATGTATGCTGGATTGTCTCCAACTCTAGTTGAGATTATACCTTATGCAGGGCTACAATTTGGAACCTATGATACATTTAAGCGTTGGGCCTCGACTTGGAACCATAATAGATATTCCCACACCACTGGAGACGATAGTCTATCTAGCTTTCAGCTTTTCATTTGTGGGTTGGCGGCTGGAACATGTGCGAAACTTGTCTGTCATCCTCTTGACGTTGTCAAGAAAAGATTTCAGATTGAAGGGCTTCAAAGGCATCCCAGATATGGAGCTCGAGTTGAGCATCGAGCATACAGTAATATGTATGATGCTGTGCAACGGATATTTCGGGCGGAAGGTTGGGCTGGACTATACAAGGGGATAATTCCATCAACTGTTAAAGCTGCACCTGCTGGTGCTGTGACATTTGTTGCATATGAAATGGTATCAGATTGGCTAGAGTCCTTGACTTAA 990 0.4253 MEEPSQLKRAIIDSSAGAISGGISRTVTSPLDVIKIRFQVQLEPTTSWALLRKDLVVTAPSKYTGMFQASKDILREEGLKGFWRGNVPALLMVMPYTAIQFTVLHKLKTIASGSSKTENHTNLSPYLSYVSGALAGCAATVGSYPFDLLRTILASQGEPKVYPNMRSAFMDIIHTRGFQGMYAGLSPTLVEIIPYAGLQFGTYDTFKRWASTWNHNRYSHTTGDDSLSSFQLFICGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPRYGARVEHRAYSNMYDAVQRIFRAEGWAGLYKGIIPSTVKAAPAGAVTFVAYEMVSDWLESLT 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04821 329 Gene3D Mitochondrial carrier domain 5 327 IPR023395 -
Trre15g04821 329 ProSiteProfiles Solute carrier (Solcar) repeat profile. 8 110 IPR018108 -
Trre15g04821 329 ProSiteProfiles Solute carrier (Solcar) repeat profile. 123 209 IPR018108 -
Trre15g04821 329 Pfam Mitochondrial carrier protein 123 210 IPR018108 -
Trre15g04821 329 Pfam Mitochondrial carrier protein 14 111 IPR018108 -
Trre15g04821 329 Pfam Mitochondrial carrier protein 227 325 IPR018108 -
Trre15g04821 329 PRINTS Mitochondrial carrier protein signature 85 105 IPR002067 GO:0055085
Trre15g04821 329 PRINTS Mitochondrial carrier protein signature 13 26 IPR002067 GO:0055085
Trre15g04821 329 PRINTS Mitochondrial carrier protein signature 182 200 IPR002067 GO:0055085
Trre15g04821 329 PRINTS Mitochondrial carrier protein signature 236 258 IPR002067 GO:0055085
Trre15g04821 329 PRINTS Mitochondrial carrier protein signature 26 40 IPR002067 GO:0055085
Trre15g04821 329 PRINTS Mitochondrial carrier protein signature 138 156 IPR002067 GO:0055085
Trre15g04821 329 FunFam Mitochondrial thiamine pyrophosphate carrier 1 4 327 - -
Trre15g04821 329 ProSiteProfiles Solute carrier (Solcar) repeat profile. 227 324 IPR018108 -
Trre15g04821 329 PANTHER SOLUTE CARRIER FAMILY 25 14 325 - -
Trre15g04821 329 SUPERFAMILY Mitochondrial carrier 10 320 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04821 Trre-Chr15 58513664 58516802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04821 1 327 Organic Solute Cotransporters AT3G21390 73.494 0.0 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04821 K15108 - gmx:100784986 584.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04821 15 58513664 58516802 Trre3g01759 3 14313885 14319242 PCT