Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01653 ATGCTTGTGGCATTGCTCTTGCTTCTGGCATTGAGCAATGCCGTGAATGTTTACGGAGATGTTGAGCAGTGTGGTTCGAATCCGAAATTGGATCCTAGACCACATAGTGTCTCTATTTTGGAATTTGGTGCAGTTGGAGATGGTAAAACACTGAATACAATTGCATTTCAGAATGCAATTTTCTATCTAAAGTCATTTGCTGATAAGGGCGGTGCTCAGCTCTATGTTCCGCCAGGAAATTGGCTCACCGGTAGTTTCAATCTTACCAGCCATCTTACCCTCTTTTTGGAGAAAGGTGCCGTCATTATTGGATCTCAGGATCCATCTCATTGGGATGTTATTGAAGCTTTACCTTCTTATGGCCGAGGGAAAGATGTTCCTGACGGAAGATACAAGAGCTTGATAAATGGTAACAAGTTGGAGGATGTGGTCATAACAGGCAATAATGGAACCATCGATGGAAATGGAATGGTTTGGTGGGAGTGGTATAAGTCTCATTCCCTTAACCACAGTCGTCCTCATCTGGTTGAAATTATATCATCTGATTCTGTCGTAGTTTCAAATCTTACATTCTTGAATGCTCCAGCATATAGCATCCACCCAGTTTATTGCAGTAATGTACATATTCAAAATGTTTCAATCTCCGCTCCTCCGGAATCACCTTATACTGCTGGCATAGTACCAGATTCTTCTGATAACGTTTGTATAGAAGATTGTATTGTGTCCATTGGATTTGATGCAATTTCTCTCAAAAGTGGATGGGATGAGTATGGAATTGCCTACGGAAGACCTATTGAGAAAGTACACATAAGAAGGGTTCAACTTCATGCATTTTCCGGCTCTGCTATTTCATTCGGTACTGAAATGTCTGGCGGAATTTCAAATGTTCTAATAGAACATGTTCACATTTGGAACTCAAATAGCGGCATCGAGTTCAGAACAAACATAGGAAGAGGTGGTTATATAAAAGAAATTGCAATATCAAACATAGAAATGGAAAATGTTTATACAGCAATTTCGGCCAAAGGTAATTCTGGTTATCATCCTGACGACAAATTTAATCCAAAAGCTCTTCCACTTTTGAATCACATTACTTTGAAGGATATTATCGGAACGAATATCACAGTTGCCGGAAGCTTTTCTGGAATAGAAGAATCACCCTTCACAAACATTTGCCTTTCAAATATAACCTTGTCAATAAATTCCGCTTCTTCCATTACATGGGAATGTTCAAATGTCTCGGGATTTTCAGACTCGGTGTCCCCTAAACCTTGTCAAGAACTTGATAACCCTTCAAATTCTTCTTCATCGTCGTGTTTCTACCTCATGAGTCTCGGTCGAAAAACTGCAGGACTTTAA 1359 0.3981 MLVALLLLLALSNAVNVYGDVEQCGSNPKLDPRPHSVSILEFGAVGDGKTLNTIAFQNAIFYLKSFADKGGAQLYVPPGNWLTGSFNLTSHLTLFLEKGAVIIGSQDPSHWDVIEALPSYGRGKDVPDGRYKSLINGNKLEDVVITGNNGTIDGNGMVWWEWYKSHSLNHSRPHLVEIISSDSVVVSNLTFLNAPAYSIHPVYCSNVHIQNVSISAPPESPYTAGIVPDSSDNVCIEDCIVSIGFDAISLKSGWDEYGIAYGRPIEKVHIRRVQLHAFSGSAISFGTEMSGGISNVLIEHVHIWNSNSGIEFRTNIGRGGYIKEIAISNIEMENVYTAISAKGNSGYHPDDKFNPKALPLLNHITLKDIIGTNITVAGSFSGIEESPFTNICLSNITLSINSASSITWECSNVSGFSDSVSPKPCQELDNPSNSSSSSCFYLMSLGRKTAGL 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01653 452 SMART pbh1 231 252 IPR006626 -
Trre3g01653 452 SMART pbh1 265 287 IPR006626 -
Trre3g01653 452 SMART pbh1 135 161 IPR006626 -
Trre3g01653 452 SMART pbh1 293 314 IPR006626 -
Trre3g01653 452 SMART pbh1 204 230 IPR006626 -
Trre3g01653 452 SMART pbh1 181 203 IPR006626 -
Trre3g01653 452 SMART pbh1 322 343 IPR006626 -
Trre3g01653 452 Pfam Glycosyl hydrolases family 28 132 414 IPR000743 GO:0004650|GO:0005975
Trre3g01653 452 SUPERFAMILY Pectin lyase-like 32 428 IPR011050 -
Trre3g01653 452 Gene3D - 21 421 IPR012334 -
Trre3g01653 452 PANTHER PECTIN LYASE-RELATED 6 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01653 Trre-Chr3 13236980 13240095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01653 1 440 Glycoside Hydrolase AT3G16850 63.039 0.0 569
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01653 - - gmx:100806574 745.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g01653 3 13236980 13240095 Trre3g01653 3 13236980 13240095 ECH
Trre15g04879 15 58918687 58921770 Trre3g01653 3 13236980 13240095 PCT