Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04879 ATGCTGCTGGCATTGAACAATGAAGTGGGAGTTAATGGTGAAAGAGGTGATGGGCAGTGTGAGTTTAATCCATCACTAAATCCAAGACCACACAGTGTCTCTATTTTGGAGTTTGGTGCTGTTGGTGATGGAAAAACATTGAACACTATTGCATTTCAGAATGCCATATTCTATCTCAAGTCATTTGCTGACAAAGGTGGTGCTCAGCTATATGTCCCCCCTGGAACATGGCTTACTGAGAGTTTCAATCTCACTAGCCATCTTACCCTCTTTTTGGAGAAAGGCGCTGTCATTGTTGGATCTCAGGATCCTTCTCAATGGGAAGTTGTTGAGCCTTTACCTTCTTATGGCCGAGGACTTGAAGTTCCTGGGGGAAGATATCAGAGCTTGATCAATGGATACATGCTACATGACGTGGTCATAACAGGTAACAATGGAACCATTGATGGCATGGGATTTATGTGGTGGGAATCATTTAGATCCCATTCGTTGAACTATAGCCGTCCTCATCTGGTTGAATTAGTGGCATCTAATGATGTGGTAGTTTCAAATCTTACATTCTTGAATGCCCCTGCATATAATATTCACCCAGTTTATTGCAGCAATGTACGTATTCATAATATTTCAATCTTTGCTCCTCCAGAATCCCCTTATACCGTTGGCATAGTACCAGATTCTTCTGATCATGTTTGCATAGAGGATTGTACCATTGCCACCGGATATGATGCAATCGCCCTAAAAAGCGGCTGGGACGAGTACGGAATTGCCTACGGTAGGCCTACCGAGAATGTACACATCAGAAGGGTGTATCTACAAGCATCCTATGGCTCTAGTCTTGCATTCGGCAGTGACATGTCTGGTGGCATTTCAAATGTTGTCGTGGAACATGTTAATCTCGACAACTCAAAAGGTGGCATTGAGTTCAGAACTGTTAGAGGAAGAGGAGGTTATATGAAGGAAATACTTATATCAGACGTGGAAATGAGGAATATCAACACAGCAATAGTTGCCACAGGTTATTGTGGTTCTCATCCTGATGATAAATTTGATCCCAATGCTTTACCAACTTTGGATCACTTTATTTTGCAAGATATAATTGGAACAAACATCAGTATTGCTGGAAGCTTTGTTGGACTACAAGAATCTCCATTCACCAACATATGCTTATCCAATATAACATTGTTTGTAAATTATGCTTCCTCCACTACTTGGAATTGCTCAAATGTATCTGGTGTTTCAGATTCTGTTATCCCTAAACCATGTCCTGATCTTGACAGCCCTTCAAATTATTCCTCATCTTGTCTCTCCATGTTGAGTATGAAAGGGAAAACTGCAGTGTCCGGCATGGTGTCGATGAAATAG 1362 0.4148 MLLALNNEVGVNGERGDGQCEFNPSLNPRPHSVSILEFGAVGDGKTLNTIAFQNAIFYLKSFADKGGAQLYVPPGTWLTESFNLTSHLTLFLEKGAVIVGSQDPSQWEVVEPLPSYGRGLEVPGGRYQSLINGYMLHDVVITGNNGTIDGMGFMWWESFRSHSLNYSRPHLVELVASNDVVVSNLTFLNAPAYNIHPVYCSNVRIHNISIFAPPESPYTVGIVPDSSDHVCIEDCTIATGYDAIALKSGWDEYGIAYGRPTENVHIRRVYLQASYGSSLAFGSDMSGGISNVVVEHVNLDNSKGGIEFRTVRGRGGYMKEILISDVEMRNINTAIVATGYCGSHPDDKFDPNALPTLDHFILQDIIGTNISIAGSFVGLQESPFTNICLSNITLFVNYASSTTWNCSNVSGVSDSVIPKPCPDLDSPSNYSSSCLSMLSMKGKTAVSGMVSMK 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04879 453 PANTHER PECTIN LYASE-RELATED 25 429 - -
Trre15g04879 453 SMART pbh1 261 283 IPR006626 -
Trre15g04879 453 SMART pbh1 289 310 IPR006626 -
Trre15g04879 453 SMART pbh1 200 226 IPR006626 -
Trre15g04879 453 SMART pbh1 227 248 IPR006626 -
Trre15g04879 453 SMART pbh1 318 339 IPR006626 -
Trre15g04879 453 SMART pbh1 177 199 IPR006626 -
Trre15g04879 453 SUPERFAMILY Pectin lyase-like 27 424 IPR011050 -
Trre15g04879 453 Pfam Glycosyl hydrolases family 28 131 410 IPR000743 GO:0004650|GO:0005975
Trre15g04879 453 Gene3D - 22 416 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04879 Trre-Chr15 58918687 58921770 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04879 25 424 Glycoside Hydrolase AT3G06770 67.500 0.0 563
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04879 - - gmx:100802343 766.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04879 15 58918687 58921770 Trre15g04879 15 58918687 58921770 ECH
Trre15g04879 15 58918687 58921770 Trre3g01653 3 13236980 13240095 PCT