Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01609 ATGACGCTATCATCACCAATCTCACTCTCTTCTTCTTACGCCACCACCATTTCTCAACCACGTCACTGTTCCCTCTTCAACACCACCCCTACAACAACTTCCACGTCACTCAATCTCCGATTCTGTGCTCTCAACCCTCAACCCTTCGCTTTCACTTCACTCCACCGTCGCTCACATCACTTCCGTCGGACACACTTCAATGCAGTATCTTCCGCGCTTTCTGACAATGGTACTCCTCCTAAATCATTCGATTATGATTTGCTTATTATTGGAGCTGGTGTTGGTGGTCACGGTGCCGCTCTTCACGCCGTCGAGAAGGGTTTGAAAACAGCCATTGTTGAGGGAGATGTGGTGGGAGGAACATGCGTGAACAGAGGTTGTGTTCCTTCTAAAGCACTTTTGGCTGTAAGTGGTCGAATGCGAGAGCTGCGGAATGATCATCATTTGAAATCACTCGGCATACAGGTTTCTAATGCTGGGTACGACAGACAAGCAGTTGCTGACCATGCTAATAATCTTGCTTCTAAAATTCGTGGTAACTTGACAAACTCGATGAAAGCACTTGGAGTGGATATACTCACTGGTTTTGGAACTATTTTGGGTCCTCAAAAGGTGAAAATTGGCTCCTCCAACAATGTAGTAACTGCAAAAGACATCATCATTGCCACTGGTTCCATTCCTTTTGTTCCTAGGGGAATTGAAGTCGATGGGAAGACTGTGATCACCAGTGACCATGCACTCAAATTGGAGACAGTTCCTGATTGGATAGCTATTGTTGGAAGTGGTTATATTGGCCTTGAATTCAGTGATGTATATACGGCACTTGGAAGTGAGGTTACTTTTGTGGAAGCTTTAGATCAGCTTATGCCTGGATTTGATCCTGAAATTAGTAAGTTGGCTCAGAGGGTTCTCATAAATCCCAGGAATATTGACTATCATACTGGCGTTTTTGCATCCAAGATCACTCCTGCAAGAAATGGGAAACCTGTATTGATTGAGCTCATTGATGCAAAGACCAAGGAACAAAAGGACACTTTAGAGGTGGATGCAGCACTAATAGCAACTGGAAGGGCTCCATTCACACAAGGTCTTGGATTGGAGAATATTGATGTTGCAACACAACATGGTTTTGTTCCCGTGGATGAACGCATGAGAGTAATTGATGCAAATGGAAACCTGGTCCCTCATTTGTATTGTATTGGCGATGCAAATGGCAAGATGATGCTTGCTCATGCTGCCAGTGCACAAGGAATTTCAGTGGTTGAACAAGTCACTGGAAGAGATCATGTGCTCAATCATTTAAGCATACCAGCTGCTTGTTTCACTCATCCTGAAATCAGCATGGTTGGATTGACAGAGCCTCAAGCAAGGGAGAAAGGTGAAAAGGAGGGGTTTGATGTAAGTGTTGCCAAAACCAGTTTTAAAGCAAACACAAAAGCCTTAGCAGAAAATGAAGGAGAGGGTCTTGCCAAGTTAATATACAGACCTGACAACGGAGAGATACTAGGAGTTCATATTTTTGGGTTGCATGCTGCAGATCTCATCCACGAGGCTTCCAATGCAATAGCGTTAGGGACACGTATTCAGGATATTAAATTTGCAGTTCATGCTCATCCAACTTTGTCCGAGGTGCTTGATGAACTATTTAAATCAGCAAAGGTTAAAGCACAAGCTTCTGACCAAGTAAAGGAACCAGTTGCAATCTAA 1707 0.4388 MTLSSPISLSSSYATTISQPRHCSLFNTTPTTTSTSLNLRFCALNPQPFAFTSLHRRSHHFRRTHFNAVSSALSDNGTPPKSFDYDLLIIGAGVGGHGAALHAVEKGLKTAIVEGDVVGGTCVNRGCVPSKALLAVSGRMRELRNDHHLKSLGIQVSNAGYDRQAVADHANNLASKIRGNLTNSMKALGVDILTGFGTILGPQKVKIGSSNNVVTAKDIIIATGSIPFVPRGIEVDGKTVITSDHALKLETVPDWIAIVGSGYIGLEFSDVYTALGSEVTFVEALDQLMPGFDPEISKLAQRVLINPRNIDYHTGVFASKITPARNGKPVLIELIDAKTKEQKDTLEVDAALIATGRAPFTQGLGLENIDVATQHGFVPVDERMRVIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFTHPEISMVGLTEPQAREKGEKEGFDVSVAKTSFKANTKALAENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHAHPTLSEVLDELFKSAKVKAQASDQVKEPVAI 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01609 568 Gene3D - 85 418 IPR036188 -
Trre3g01609 568 Gene3D - 435 560 IPR016156 GO:0016491|GO:0050660
Trre3g01609 568 Gene3D - 228 355 IPR036188 -
Trre3g01609 568 FunFam Dihydrolipoyl dehydrogenase 435 559 - -
Trre3g01609 568 Pfam Pyridine nucleotide-disulphide oxidoreductase 85 417 IPR023753 GO:0016491
Trre3g01609 568 PIRSF Hg-II_reductase_MerA 53 552 IPR001100 GO:0016491
Trre3g01609 568 Pfam Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 436 547 IPR004099 -
Trre3g01609 568 ProSitePatterns Pyridine nucleotide-disulphide oxidoreductases class-I active site. 119 129 IPR012999 GO:0016668
Trre3g01609 568 PANTHER DISULFIDE OXIDOREDUCTASE 82 552 - -
Trre3g01609 568 SUPERFAMILY FAD/NAD-linked reductases, dimerisation (C-terminal) domain 435 549 IPR016156 GO:0016491|GO:0050660
Trre3g01609 568 PRINTS FAD-dependent pyridine nucleotide reductase signature 87 106 - -
Trre3g01609 568 PRINTS FAD-dependent pyridine nucleotide reductase signature 348 364 - -
Trre3g01609 568 PRINTS FAD-dependent pyridine nucleotide reductase signature 216 234 - -
Trre3g01609 568 PRINTS FAD-dependent pyridine nucleotide reductase signature 382 404 - -
Trre3g01609 568 PRINTS FAD-dependent pyridine nucleotide reductase signature 255 273 - -
Trre3g01609 568 FunFam Putative dihydrolipoyl dehydrogenase 228 355 - -
Trre3g01609 568 SUPERFAMILY FAD/NAD(P)-binding domain 66 426 IPR036188 -
Trre3g01609 568 PRINTS Pyridine nucleotide disulphide reductase class-I signature 349 363 - -
Trre3g01609 568 PRINTS Pyridine nucleotide disulphide reductase class-I signature 118 133 - -
Trre3g01609 568 PRINTS Pyridine nucleotide disulphide reductase class-I signature 501 516 - -
Trre3g01609 568 PRINTS Pyridine nucleotide disulphide reductase class-I signature 432 453 - -
Trre3g01609 568 PRINTS Pyridine nucleotide disulphide reductase class-I signature 219 228 - -
Trre3g01609 568 PRINTS Pyridine nucleotide disulphide reductase class-I signature 255 280 - -
Trre3g01609 568 PRINTS Pyridine nucleotide disulphide reductase class-I signature 397 404 - -
Trre3g01609 568 PRINTS Pyridine nucleotide disulphide reductase class-I signature 523 543 - -
Trre3g01609 568 PRINTS Pyridine nucleotide disulphide reductase class-I signature 86 108 - -
Trre3g01609 568 NCBIfam dihydrolipoyl dehydrogenase 85 555 IPR006258 GO:0004148|GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01609 Trre-Chr3 12797319 12803007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01609 3 559 Acyl Lipid Metabolism Gene Families AT3G16950 80.496 0.0 899
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01609 K00382 - gmx:100803176 955.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g01609 3 12797319 12803007 Trre3g01609 3 12797319 12803007 ECH
Trre15g04902 15 59155202 59161624 Trre3g01609 3 12797319 12803007 PCT