Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04902 ATGCAATCATCTCTCTCACTCTCTTTCTCTCCCACCTCCTCTGCCACCACAATCTCCAGATCACATCACTCTTTTCCGCTCTCCACCGGCACCAAACCTCTCAACCTCCGTTTCTGTGGTTTTAGACGCGAGGCTCTGGGTTTAGGTTTTTCAACTTCTCTCAATCGTAATCTCCAGCAGCAGCAGCTTCCCCGCCGTCAATACTCCGCTGTAGTATCCGCTGCACGCTCTGACAATGGCAGCTCTTCTGGATCATCCTTCGATTATGATTTGTTGATTATTGGTGCTGGTGTTGGTGGTCACGGTGCTGCTCTTCACGCTGTTGAAAAGGGATTGAAAACAGCTATAGTGGAAGGAGACGTGGTGGGAGGGACATGTGTAAACAGAGGCTGTGTTCCTTCGAAAGCTCTTTTGGCTGTTAGTGGTCGTATGCGAGAACTAAAGAGTGATCATCACTTGAAATCCTTGGGCTTACATGTTTCTTCTGCTGGATATGATAGACAAGGAGTAGCTGATCATGCTAATAATCTTGCTTCAAAAATCCGTAGTAATTTGACAAACTCCCTAAAAGCGATTGGAGTAGACATACTTACTGGTTTTGGTACTGTAGTGGGTCCTCAAAAGGTGAAGATTGGCTCTTCAGACAACATAGTAACTGCAAAAGATATCATCATTGCCACCGGTTCTGTTCCTTTTGTTCCTAAGGGTGTTGAAGTTGATGGGAAGACTGTAATTACCAGTGACCATGCACTCAAACTGGAGTCTGTTCCCGAATGGATAGCAATTGTAGGAAGCGGGTATATTGGCCTTGAATTCAGTGATGTATATACGGCACTTGGAAGCGAGGTTACTTTTGTTGAAGCTTTAGATCAGCTTATGCCTGGATTTGATCCTGAAATCAGCAAGCTGGCTCAAAGGGTTCTTGTTACTCCCCGTAATATTGATTATCATACTGGAGTGTTTGCATCCAAGATTACGCCTGCAAGGGATGGAAAACCTGTCTTGATTGAGCTTATTGATGCAAAAACTAAGGAACCAAAGGACACTTTGGAGGTTGATGCTGCACTAATAGCAACTGGAAGGGCTCCATTCACAGAAGGTCTAGGACTGGAAAATGTTGATGTGGCAACACAGCGAGGTTTTATTCCTGTGGACGAGCGCATGCGTGTAATTGATGCTAATGGCAAGCTGGTACCTCATTTATACTGTATTGGTGATGCAAATGGAAAAATGATGCTTGCTCACGCTGCCAGTGCACAAGGAATTTCAGTGGTTGAACAAGTCACCGGAAGAGATCATGTCCTCAATCATTTAAGTATCCCAGCTGCATGTTTCACTCATCCTGAAATCAGCATGGTTGGATTGACAGAGCCTCAAGCAAGGGAGAAAGGTGAAAAGGAGGGGTTTGAAGTTAGTGTTGCTAAAACAAGTTTTAAAGCTAACACAAAAGCCCTAGCAGAAAATGAAGGCGAGGGACTTGCCAAGTTGATATACAGACCTGACAATGGAGAGATCCTAGGAGTTCATATTTTTGGTTTGCATGCAGCAGATCTTATTCATGAAGCATCCAATGCTATAGCATTAGGAACACGTATTCAGGACATAAAACTTGCCGTTCATGCACATCCAACTCTGTCTGAGGTTCTTGATGAGCTATTTAAATCAGCAAAGGTTAAAGAACACGCTTCTATCCCAGTAAGTGAACCAGTTGCAGTCTAA 1719 0.441 MQSSLSLSFSPTSSATTISRSHHSFPLSTGTKPLNLRFCGFRREALGLGFSTSLNRNLQQQQLPRRQYSAVVSAARSDNGSSSGSSFDYDLLIIGAGVGGHGAALHAVEKGLKTAIVEGDVVGGTCVNRGCVPSKALLAVSGRMRELKSDHHLKSLGLHVSSAGYDRQGVADHANNLASKIRSNLTNSLKAIGVDILTGFGTVVGPQKVKIGSSDNIVTAKDIIIATGSVPFVPKGVEVDGKTVITSDHALKLESVPEWIAIVGSGYIGLEFSDVYTALGSEVTFVEALDQLMPGFDPEISKLAQRVLVTPRNIDYHTGVFASKITPARDGKPVLIELIDAKTKEPKDTLEVDAALIATGRAPFTEGLGLENVDVATQRGFIPVDERMRVIDANGKLVPHLYCIGDANGKMMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFTHPEISMVGLTEPQAREKGEKEGFEVSVAKTSFKANTKALAENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKLAVHAHPTLSEVLDELFKSAKVKEHASIPVSEPVAV 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04902 572 Gene3D - 439 563 IPR016156 GO:0016491|GO:0050660
Trre15g04902 572 Gene3D - 232 359 IPR036188 -
Trre15g04902 572 FunFam Putative dihydrolipoyl dehydrogenase 232 359 - -
Trre15g04902 572 Gene3D - 90 422 IPR036188 -
Trre15g04902 572 ProSitePatterns Pyridine nucleotide-disulphide oxidoreductases class-I active site. 123 133 IPR012999 GO:0016668
Trre15g04902 572 SUPERFAMILY FAD/NAD(P)-binding domain 82 430 IPR036188 -
Trre15g04902 572 SUPERFAMILY FAD/NAD-linked reductases, dimerisation (C-terminal) domain 439 553 IPR016156 GO:0016491|GO:0050660
Trre15g04902 572 PRINTS Pyridine nucleotide disulphide reductase class-I signature 505 520 - -
Trre15g04902 572 PRINTS Pyridine nucleotide disulphide reductase class-I signature 122 137 - -
Trre15g04902 572 PRINTS Pyridine nucleotide disulphide reductase class-I signature 353 367 - -
Trre15g04902 572 PRINTS Pyridine nucleotide disulphide reductase class-I signature 259 284 - -
Trre15g04902 572 PRINTS Pyridine nucleotide disulphide reductase class-I signature 401 408 - -
Trre15g04902 572 PRINTS Pyridine nucleotide disulphide reductase class-I signature 527 547 - -
Trre15g04902 572 PRINTS Pyridine nucleotide disulphide reductase class-I signature 223 232 - -
Trre15g04902 572 PRINTS Pyridine nucleotide disulphide reductase class-I signature 436 457 - -
Trre15g04902 572 PRINTS Pyridine nucleotide disulphide reductase class-I signature 90 112 - -
Trre15g04902 572 PRINTS FAD-dependent pyridine nucleotide reductase signature 91 110 - -
Trre15g04902 572 PRINTS FAD-dependent pyridine nucleotide reductase signature 220 238 - -
Trre15g04902 572 PRINTS FAD-dependent pyridine nucleotide reductase signature 352 368 - -
Trre15g04902 572 PRINTS FAD-dependent pyridine nucleotide reductase signature 259 277 - -
Trre15g04902 572 PRINTS FAD-dependent pyridine nucleotide reductase signature 386 408 - -
Trre15g04902 572 FunFam Dihydrolipoyl dehydrogenase 439 564 - -
Trre15g04902 572 PANTHER DISULFIDE OXIDOREDUCTASE 86 557 - -
Trre15g04902 572 MobiDBLite consensus disorder prediction 1 26 - -
Trre15g04902 572 Pfam Pyridine nucleotide-disulphide oxidoreductase 89 421 IPR023753 GO:0016491
Trre15g04902 572 NCBIfam dihydrolipoyl dehydrogenase 89 558 IPR006258 GO:0004148|GO:0050660
Trre15g04902 572 Pfam Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 440 551 IPR004099 -
Trre15g04902 572 PIRSF Hg-II_reductase_MerA 39 554 IPR001100 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04902 Trre-Chr15 59155202 59161624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04902 1 563 Acyl Lipid Metabolism Gene Families AT3G16950 83.039 0.0 922
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04902 K00382 - gmx:100809578 955.281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04902 15 59155202 59161624 Trre15g04902 15 59155202 59161624 ECH
Trre15g04902 15 59155202 59161624 Trre3g01609 3 12797319 12803007 PCT