Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00679 ATGGACCCGTTAGCTTCAATCAATGAAAACGAACACGATGACATTTTCACCGATGCACTTCTCCAATCTTCCGCCGACGACCCACCGGAAACTTCTACCTCCGATTCCACGCTTTCAGATTCTAAACCCATCATCTCCCCCGAACCCCAAGATTCGCATTCCAACCCACCCCCGTCCTCTCCCTCTCCGGCCACCTTATTTCGCCGCCGATCAATTCGTCTCGGAACCAAGCAATCCTCTGATTCCAGCACCGATATCGATTCAATTAATGTCACAAGAAGAAGCTTCCGACATAAGCCAAGGTATATAAATCTCAAACAAGATGAAAATTTCACCCCGAAACCCTATTCCGATGAAGCTCAAAAAACTATCACTTCACAAACTTCAATTCCTGCAGCAGAAGAAAACAACGGAGAATCTACCATAACTACAGCTACAAATGATGCTGAAGCTAACGATTCCGCTGACTCGGCACCTCGACTCGGTGACTCTTCTTCTAGTTTTCTAGAATTGATAGTAGGGTTGTGTTTCGTGGAGAAGCCGATTCAGATTAAGGAAGTTTTGAATTTTGATTATACTAAGCTTAGTCCAGTGGCTTATGTTCCTATACTATCGTGTGATGATGTTGGAAGGAAAGATTATGAGAATAATAATGTTGAAGTTGGAAAGTTGATGATGATGGGTGAAAGGGTTATACCTTCTAGACATAGAGTGCAAGTTACTGTTTCATTGAGAGTTCCGGAGTCTGGATACAACAGAAATCTTGGAGTCTTTCAGGCCAGGGTTGATTTTCTATTGTCTAATGGTAAAACTATTGCAAGCTTGAGTCAACCTTGCATGTTAAGATTCCGAAGCGAACCTATCCGCCTAATCATGACTTTCCTCAAAATTGCTCCTCTCATTACTGGCTATACATCCGAAACCCAGATTTTGAATGTCAAGATGAGAGGTTTCGTTGAAGGGAATATACCTACTTCATGCTTGAAAGTGACACTTGAGCAACGACCAGAATATCAACCTGGTGCTGGCATTCCAGAAATATATGATGCATCTCTTGTTGTTGAGTCAGAACTTCCCTTTTTCAAAAGGATGATTTGGCATTGGAAGATGAGCATATTTATATGGACTGCAATGATGGCATTCTTCACAGAATTGATTTTTATTCTAGTGTTTTGTAGGCCTATAATAATTCCAAGAACAAGGCAAAGGGTTGCATCTGCTCGCGGTCCTGCAACTTTGAACAGTCTTCAGATACAAAGTTGA 1263 0.4188 MDPLASINENEHDDIFTDALLQSSADDPPETSTSDSTLSDSKPIISPEPQDSHSNPPPSSPSPATLFRRRSIRLGTKQSSDSSTDIDSINVTRRSFRHKPRYINLKQDENFTPKPYSDEAQKTITSQTSIPAAEENNGESTITTATNDAEANDSADSAPRLGDSSSSFLELIVGLCFVEKPIQIKEVLNFDYTKLSPVAYVPILSCDDVGRKDYENNNVEVGKLMMMGERVIPSRHRVQVTVSLRVPESGYNRNLGVFQARVDFLLSNGKTIASLSQPCMLRFRSEPIRLIMTFLKIAPLITGYTSETQILNVKMRGFVEGNIPTSCLKVTLEQRPEYQPGAGIPEIYDASLVVESELPFFKRMIWHWKMSIFIWTAMMAFFTELIFILVFCRPIIIPRTRQRVASARGPATLNSLQIQS 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00679 420 MobiDBLite consensus disorder prediction 110 139 - -
Trre3g00679 420 PANTHER BERNARDINELLI-SEIP CONGENITAL LIPODYSTROPHY 2 HOMOLOG BSCL2 PROTEIN 167 417 IPR009617 GO:0019915
Trre3g00679 420 MobiDBLite consensus disorder prediction 100 139 - -
Trre3g00679 420 MobiDBLite consensus disorder prediction 1 16 - -
Trre3g00679 420 MobiDBLite consensus disorder prediction 1 66 - -
Trre3g00679 420 Pfam Putative adipose-regulatory protein (Seipin) 175 380 IPR009617 GO:0019915
Trre3g00679 420 MobiDBLite consensus disorder prediction 24 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00679 Trre-Chr3 4688766 4691042 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00679 K19365 - gmx:100796452 386.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g00679 3 4688766 4691042 Trre3g00679 3 4688766 4691042 ECH
Trre3g00679 3 4688766 4691042 Trre7g04761 7 55159140 55161360 ECH
Trre7g04761 7 55159140 55161360 Trre3g00679 3 4688766 4691042 PCT