Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00414 ATGTCCATGCAACGTTTCTACCGCAAACTTAAAATTCTTCAACCAAAAGTTTTCATAAGCCACAAAGGAATTGAAACAAAAAAAAACATAGCTGGTTTGTTGCACAAGGATTTAACAAGAATGGGAATAAGTTCATTTTTGGATAGCATGAACATGAAACCTGGAGACAAACTCATTCCTCATATAGACAAAGCAATTTTTGGTTGTAAAGTCGGTGTTACCATCATCTCTCCCCGTTACTGCGACTCTTATTACTGTCTCCATGAACTTGCACTGCTCATGGAGACAAAAAAAAGAGTCGTTCCTATCTTCTTCAATGTTAAGCCGTCGCAACTTATGGTCAAGGACGACGGAACTCGCTCTCAGAAGCAGCTTAGAAGGTTCAGTTTGGCATTAGAGGAAGCCAAAAATACTGTGGGGTTAACCTTTGATTCTTTCAACGGGGATTGGCCAGAACTACTAAATGATGCTACAGAGGCAGTGATCAGGAACTTGATGGAGGCTGAGAATGAGCAATAA 519 0.4027 MSMQRFYRKLKILQPKVFISHKGIETKKNIAGLLHKDLTRMGISSFLDSMNMKPGDKLIPHIDKAIFGCKVGVTIISPRYCDSYYCLHELALLMETKKRVVPIFFNVKPSQLMVKDDGTRSQKQLRRFSLALEEAKNTVGLTFDSFNGDWPELLNDATEAVIRNLMEAENEQ 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00414 172 ProSiteProfiles TIR domain profile. 13 166 IPR000157 GO:0007165
Trre3g00414 172 SMART till_3 14 142 IPR000157 GO:0007165
Trre3g00414 172 Pfam TIR domain 17 118 IPR000157 GO:0007165
Trre3g00414 172 PANTHER COP1-INTERACTING PROTEIN-RELATED 17 171 - -
Trre3g00414 172 SUPERFAMILY Toll/Interleukin receptor TIR domain 15 140 IPR035897 -
Trre3g00414 172 Gene3D - 13 169 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00414 Trre-Chr3 2783863 2784647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00414 16 144 Miscellaneous Gene Families AT1G57670 27.972 3.16e-13 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00414 - - gmx:100806903 244.202
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g00414 3 2783863 2784647 Trre3g00414 3 2783863 2784647 ECH
Trre7g03641 7 43762143 43763075 Trre3g00414 3 2783863 2784647 PCT