Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00307 ATGGCAGTGGAGTATACATGTTGTGGAACAGAGTTTTTCATAAGAATTGTGATAATTGTGTTACTTGTTGTGTTTGCTGGATTGATGTCAGGGCTTACTTTAGGTCTCATGTCTTTGAGTCTTGTTGATCTTGAAGTTCTTGCTAAATCTGGTACACCTCAAGATAGAAAACATGCTGAGAAAATATTGCCTGTTGTAAGAAATCAACATCTACTACTTTGCACACTTCTAATTTGCAATGCAGCAGCTATGGAGGCACTTCCAATTTTTCTTGATAGTCTAGTTGTTGCTTGGGGTGCTATCCTAATTTCTGTGACATTAATTCTTCTGTTTGGTGAGATTATTCCTCAATCAGTTTGTTCTCGGTATGGTTTAACAATTGGTGCAACAGTAGCTCCAGCTGTTCGTGTTCTTGTATGGATATGTCTTCCTGTTGCTTATCCAATTAGCAAGTTGTTGGATTATTTGTTGGGGCATCGACACGAAGCTCTTTTCCGCAGAGCCGAATTAAAAACACTCTTAGATTTACATGGTAATGAGGCTGGGAAAGGTGGTGAACTAACACATGATGAAACAACTATCATTGCTGGGGCACTTGAACTCTCTGAGAAGACTGCTGGTGATGCCATGACTCCTATAAATGAAATATTTTCTATTGATATTAATTCAAAACTTGATAGGGATTTGATGACTCTAATATTGGAGAAAGGACATAGTAGAGTCCCTGTTTATTATGAGGAGCCTACAAATATCATTGGACTTGTCTTGATCAAGAATTTGTTAACTATTGATCCAGAAGAAGAACTACCTGTGAAAAGTGTGACCATACGCAAAATACCAAGGGTTCCAGAAATGATGCCACTTTATGATATATTGAATGAATTCCAAAAGGGCCATAGTCACATGGCTGTTGTTGTGAGACATTTTGACAAGACAGAGCAACAAATAACCAATAATAATTGCAGTGATTCATTAAGAGATGTGAAGGTGACTATTGATGTGGAGAAGAATCCTCAACAAGATAAAATGTTGAAAAACAAGATGCAACTTCATAAGAGGAAAAGCTTACCTAATGCAAGTAATTCAAATATGAGTACTAGTTCTAGGAGCAAAAAATGGTCACAAAATATATACTCAGATATTTTGGAAATTGATGGAAATTCAATTCCAAAGCTACCTGAAAAAGAAGAAGCTGTTGGAATAATTACAATGGAAGATGTAATTGAAGAGCTTTTGCAGGAGGAAATCTTTGATGAGACAGATCATCATTTTGAAGACTCATAA 1284 0.3637 MAVEYTCCGTEFFIRIVIIVLLVVFAGLMSGLTLGLMSLSLVDLEVLAKSGTPQDRKHAEKILPVVRNQHLLLCTLLICNAAAMEALPIFLDSLVVAWGAILISVTLILLFGEIIPQSVCSRYGLTIGATVAPAVRVLVWICLPVAYPISKLLDYLLGHRHEALFRRAELKTLLDLHGNEAGKGGELTHDETTIIAGALELSEKTAGDAMTPINEIFSIDINSKLDRDLMTLILEKGHSRVPVYYEEPTNIIGLVLIKNLLTIDPEEELPVKSVTIRKIPRVPEMMPLYDILNEFQKGHSHMAVVVRHFDKTEQQITNNNCSDSLRDVKVTIDVEKNPQQDKMLKNKMQLHKRKSLPNASNSNMSTSSRSKKWSQNIYSDILEIDGNSIPKLPEKEEAVGIITMEDVIEELLQEEIFDETDHHFEDS 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00307 427 ProSiteProfiles CBS domain profile. 210 271 IPR000644 -
Trre3g00307 427 Pfam Cyclin M transmembrane N-terminal domain 18 190 IPR002550 -
Trre3g00307 427 MobiDBLite consensus disorder prediction 338 371 - -
Trre3g00307 427 ProSiteProfiles CNNM transmembrane domain profile. 8 191 IPR002550 -
Trre3g00307 427 SUPERFAMILY CBS-domain pair 194 413 IPR046342 -
Trre3g00307 427 Gene3D - 189 328 IPR046342 -
Trre3g00307 427 CDD CBS_pair_CorC_HlyC_assoc 205 313 IPR044751 -
Trre3g00307 427 Gene3D - 329 419 IPR046342 -
Trre3g00307 427 PANTHER METAL TRANSPORTER CNNM 3 424 IPR045095 GO:0010960
Trre3g00307 427 MobiDBLite consensus disorder prediction 353 371 - -
Trre3g00307 427 FunFam DUF21 domain-containing protein 189 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00307 Trre-Chr3 2015687 2018584 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00307 K16302 - gmx:100795897 686.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g00307 3 2015687 2018584 Trre3g00307 3 2015687 2018584 ECH
Trre7g03850 7 46798331 46804744 Trre3g00307 3 2015687 2018584 PCT