Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre3g00253 | ATGGGAGATTCTTCTTCTTCAGAGAAGATGAAGTCAGAAGCAGTTAAGATAATCGAGTCATTCCAAATTCTTCCAAAACTCGTCGTTTTCGATCTCGATTACACTCTCTGGCCATTCTACTGCGAATGTCGATCGAAGCGCGAAACACCTTCTCTTTATCCCCACGCCATGGGAATCTTGTTGGCTCTCAAACACAAAGGAATTGATATTGCAATCGCTTCTCGATCTCCAACTGCTGATATTGCTAAGGCTTTTCTCAACAAATTAGGAATCACTTCATTCTTCGTTGCTCAGGAAATATATTCGAGCTGGAGTCATAAAACAGATCATTTTCAGAGAATTCATTCAACTACTGGAATTCCGTTCAACTCTATGCTCTTTTTTGATGATGAGAATAGGAATATTCAAGCGGTCTCTAAAATGGGAGTGACTAGCATTTTGGTTGATAATGGGGTGAATCTTGGAGCCTTATCTCAAGGTCTTACACAGTTTTCTCGTAACTGGAATACATCACAGAAGAACAAGCAAAAATGGCTATCCAACTATTCTCAGAAGCCAGATACTTCCAACTCTTCCCCATCAAATTCAACCTCCAAGTAA | 600 | 0.4 | MGDSSSSEKMKSEAVKIIESFQILPKLVVFDLDYTLWPFYCECRSKRETPSLYPHAMGILLALKHKGIDIAIASRSPTADIAKAFLNKLGITSFFVAQEIYSSWSHKTDHFQRIHSTTGIPFNSMLFFDDENRNIQAVSKMGVTSILVDNGVNLGALSQGLTQFSRNWNTSQKNKQKWLSNYSQKPDTSNSSPSNSTSK | 199 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre3g00253 | 199 | NCBIfam | HAD-IIIC family phosphatase | 26 | 141 | IPR010033 | - | |
| Trre3g00253 | 199 | Gene3D | - | 3 | 170 | IPR023214 | - | |
| Trre3g00253 | 199 | Pfam | Acid Phosphatase | 24 | 166 | IPR010036 | GO:0016791 | |
| Trre3g00253 | 199 | MobiDBLite | consensus disorder prediction | 175 | 199 | - | - | |
| Trre3g00253 | 199 | CDD | HAD_MDP-1_like | 25 | 148 | IPR035679 | - | |
| Trre3g00253 | 199 | FunFam | Magnesium-dependent phosphatase 1 | 10 | 170 | - | - | |
| Trre3g00253 | 199 | PANTHER | MAGNESIUM-DEPENDENT PHOSPHATASE 1 MDP1 | 8 | 174 | IPR010036 | GO:0016791 | |
| Trre3g00253 | 199 | SUPERFAMILY | HAD-like | 25 | 158 | IPR036412 | - | |
| Trre3g00253 | 199 | SFLD | C1.5.2: MDP Like | 6 | 172 | - | - | |
| Trre3g00253 | 199 | SFLD | Haloacid Dehalogenase | 6 | 172 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre3g00253 | Trre-Chr3 | 1661324 | 1662769 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre3g00253 | K17619 | - | gmx:100305763 | 318.931 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Trre7g03956 | 7 | 47809395 | 47810838 | Trre3g00253 | 3 | 1661324 | 1662769 | PCT |