Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06327 ATGGCCTCCAATTTCAACTCACCAGGAGGAGCTCAAAATCAAAGAGATTTGGAAAAAGGAACGATGACTCCACCACAAAATCCACTTTCTGAAATATCTCCGTCACCATCTCCGTCGTCTGCGACGGCGCCGGCTTTGGTGTTATCAAACTCAGGAAAACGGATCGATCAAGCAGGGAAGAAGAAATACGTAAAGCAAGTAACGGGTCGTCACAACGACACGGAACTTCATCTGGCGGCTCAAAGAGGTGATGTTGGTGCTGTGAGACAGATCCTTCATGATATTGATTCTCAGATAATGGGTAGTTTGAGTGGTGATGATGTTGATCTTAACGCTGAGATTGCTGAAGTTCGTGCTCTTGTTGTTAATGAAGAGAATGAACTTGGTGAAACAGCTTTGTTTACTGCTGCTGAAAAGGGACATCTTGATGTTGTTAAGGAATTGTTGAAACATTCAACACTTCAAACTGTTTCGAAAAAGAATCGATCTGGTTTTGATCCTTTGCATATTGCTGCTAGTCAAGGCCATCATGCCATTGTTCAGGTTTTACTAGATTATGACCCAAGTTTAAGCAAAACCATTGGTCCATCCAATGCCACTCCACTTATTACAGCAGCGACAAGAGGACATGTTGAAGTGGTGAATGAACTGCTGTCAAAGGATGGAAGCTTGTTGGAAATAGCAAGATCCAATGGAAAAAATGCTTTGCATTTGGCTGCTCGTCCGGGTCATATAGAAATCGTAAAAGCCTTGCTTAGCAAAGACCCTCAATTGGCTCGGAGGACTGACAAGAAAGGGCAAACTGCATTGCATATGGCTGTAAAAGGACAGAGCTGTGACGTGGTGAAGTTGCTTCTTGAAGCAGATGCTGCTATTGTTATGCTACCTGACAAATTCGGTAACACTGCATTACATGTGGCAACTAGGAAAAAGCGAGCAGAGATAGTGAATGAGCTGTTACTCCTGCCAGATACCAACGTAAATGCATTAACGCGAGACCACAAAACTGCTTTGGACATTGCTGAAAATCTTCCTCCCTCTGAAGAGTCGTCAGATATAAAGGATGTCCTTTCTCGGTATGGGGCACTTAGAGCTAACGAGCTCAACCAACCAAGGGACGAACTGAGGAAAACTGTTACGCAAATTAAGAAAGATGTTCACACCCAGCTGGAACAAACCAAGAGAACCAACAAAAATGTGCATAATATTTCCAAAGAGCTAAGGAAACTCCACAGGGAAGGAATTAACAATGCTACAAACTCGGTGACAGTGGTGGCTGTATTGTTTGCTACAGTTGCTTTTGCTGCTATATTCACCATACCTGGTGGGGATAATGACGATGGTTCAGGAGTGGTAGCCGCCTATTCTGCTTTCAAAATTTTCTTCATATTTAACGCTATTGCACTTTTTACATCTTTGGCTGTTGTGGTTGTTCAAATTACCTTGGTTAGAGGTGAAACTAAAGCAGAGAAAAGGGTGGTAGAGGTGATTAACAAGCTCATGTGGTTGGCTTCTGTTTGTACCTCGGTGGCATTTATTGCCTCTTCTTACATAGTTGTCGGTCGGAGGAATCAGTGGGCTGCAATTCTGGTTACGGTAGTCGGAGGAGTGATAATATCTGGAGTTCTTGGTACCATGACTTTCTATGTAGTGAGATCTAAGAGAACAAGATCAATGAGGAAGAAAGAGAAACAGATAGCGAGGGGAAGTGGATCCAACTCATGGCATCATTCGGAGTTCTCCAATTCCGAGGTTGATCGAATTTATGCGCTTTGA 1776 0.4319 MASNFNSPGGAQNQRDLEKGTMTPPQNPLSEISPSPSPSSATAPALVLSNSGKRIDQAGKKKYVKQVTGRHNDTELHLAAQRGDVGAVRQILHDIDSQIMGSLSGDDVDLNAEIAEVRALVVNEENELGETALFTAAEKGHLDVVKELLKHSTLQTVSKKNRSGFDPLHIAASQGHHAIVQVLLDYDPSLSKTIGPSNATPLITAATRGHVEVVNELLSKDGSLLEIARSNGKNALHLAARPGHIEIVKALLSKDPQLARRTDKKGQTALHMAVKGQSCDVVKLLLEADAAIVMLPDKFGNTALHVATRKKRAEIVNELLLLPDTNVNALTRDHKTALDIAENLPPSEESSDIKDVLSRYGALRANELNQPRDELRKTVTQIKKDVHTQLEQTKRTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFAAIFTIPGGDNDDGSGVVAAYSAFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRNQWAAILVTVVGGVIISGVLGTMTFYVVRSKRTRSMRKKEKQIARGSGSNSWHHSEFSNSEVDRIYAL 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06327 591 SMART ANK_2a 231 260 IPR002110 GO:0005515
Trre1g06327 591 SMART ANK_2a 299 329 IPR002110 GO:0005515
Trre1g06327 591 SMART ANK_2a 265 294 IPR002110 GO:0005515
Trre1g06327 591 SMART ANK_2a 71 100 IPR002110 GO:0005515
Trre1g06327 591 SMART ANK_2a 128 157 IPR002110 GO:0005515
Trre1g06327 591 SMART ANK_2a 163 192 IPR002110 GO:0005515
Trre1g06327 591 SMART ANK_2a 197 226 IPR002110 GO:0005515
Trre1g06327 591 Pfam Domain of unknown function 413 519 IPR026961 -
Trre1g06327 591 Gene3D - 200 404 IPR036770 -
Trre1g06327 591 Gene3D - 71 199 IPR036770 -
Trre1g06327 591 SUPERFAMILY Ankyrin repeat 76 344 IPR036770 -
Trre1g06327 591 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 43 568 - -
Trre1g06327 591 ProSiteProfiles Ankyrin repeat region circular profile. 128 152 - -
Trre1g06327 591 ProSiteProfiles Ankyrin repeat profile. 128 160 IPR002110 GO:0005515
Trre1g06327 591 ProSiteProfiles Ankyrin repeat profile. 163 185 IPR002110 GO:0005515
Trre1g06327 591 MobiDBLite consensus disorder prediction 1 44 - -
Trre1g06327 591 FunFam Ankyrin repeat-containing protein ITN1 45 189 - -
Trre1g06327 591 ProSiteProfiles Ankyrin repeat profile. 231 263 IPR002110 GO:0005515
Trre1g06327 591 ProSiteProfiles Ankyrin repeat region circular profile. 231 254 - -
Trre1g06327 591 ProSiteProfiles Ankyrin repeat region circular profile. 265 292 - -
Trre1g06327 591 ProSiteProfiles Ankyrin repeat profile. 265 297 IPR002110 GO:0005515
Trre1g06327 591 FunFam Ankyrin repeat-containing protein ITN1 isoform A 190 389 - -
Trre1g06327 591 ProSiteProfiles Ankyrin repeat profile. 299 332 IPR002110 GO:0005515
Trre1g06327 591 ProSiteProfiles Ankyrin repeat region circular profile. 163 185 - -
Trre1g06327 591 Pfam Ankyrin repeats (3 copies) 76 189 IPR002110 GO:0005515
Trre1g06327 591 Pfam Ankyrin repeats (3 copies) 198 256 IPR002110 GO:0005515
Trre1g06327 591 Pfam Ankyrin repeats (3 copies) 263 328 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06327 Trre-Chr1 66578353 66581110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06327 17 591 Miscellaneous Gene Families AT3G12360 80.379 0.0 942
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06327 - - gmx:100802596 956.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04186 13 49622144 49625178 Trre1g06327 1 66578353 66581110 ECH
Trre1g06327 1 66578353 66581110 Trre1g06327 1 66578353 66581110 ECH