Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04186 ATGGATCATCCTCTTTCCGAACCCGCCACACCAACCACCCCAAGACCCACCCTATTCCTCTCCACTTCCGGCAAAGCCCTTCTCGTTTCAAACTCCAACAAATCCCTCGTCATTTCAAATTCAGGCAAACGCCTCGATAACACCAATAGTAGAAAAAAATACGTCAAACAGGTTACCGGCAGACATAATGATACCGAGCTTCATCTCGCCGCGCAACGCGGTGATGCTGCTGCGGTTAGGCAGATTCTGGCTGAGATTGATGATCAAATGATGGGAACGTTAAGTGGTGCTGAATTTGATGCTGAGGTTGCTGGTATTAGGTCTGCCATTGTTAATGAGGTTAATGAGTTGGGTGAAACTGCTTTGTTTACCGCTGCTGATAAAGGACGGTTTGATGTTGTTAAAGAGCTTCTTCCTTATACAACCAAAGAGGCACTTTCTTTAAAAAACCGTTCTGGTTTTGATACTTTGCATATTGCAGCAAACCAAGGTCACAAAGATATTGTGCAGTTGTTGCTAGACTATGATCCGGAGCTAATCAAGACATTTGCACAGTCAAATGCAACTCCTCTTGTATCTGCAGCTACAAGAGGGCATGCGGATGTTGTTGAACTCTTACTATTATGTGATCCCAGTCAGTTAGAGATAGCTAGATCCAATGGAAAGAATGCACTCCATTTAGCTGCACGTCAAGGTTATGTTGATGTTGTCAAGATTTTGCTAGGGAAGGACCCGCAGCTTGCTCGAAGGACTGATAAGAAAGGACAAACTTCGCTTCATATGGCTGTCAAAGGGGTTAACTGTGAAGTGGTGAAATTGCTTCTTGCTGCTGATGCTGCAAGTGTCATGCTTCCTGATAAGTTTGGAAACACCGCTTTGCATGTAGCCACCAGGAAGAAGAGGGTAGAGATAGTGAATGAGTTATTGCTTCTACCTGACACCAATGTGAATGCCCTCACAAGAGACCACAAAACAGCTCTCGACCTTGCGGAAGCACTTCCAATATCGGAAGAAATTTTGGAGATTAAGGACTCCCTGATTCGTTATGGTGCAGTTAAAGCCAATGATCTCAACCAGCCAAGGGACGAGCTAAGGAAAACCATGACACAGATTAAGAAAGATGTATCTTTTCAGCTTGAACAAACTCGAAAAACAAACAAGAACGTGAATGGGATTGCCAAGGAGCTACGCAAGTTGCACAGAGCAGGAATCAACAATGCTACCAACTCTGTAACTGTGGTTTCAGTACTATTTGCAACGGTGGCATTTGCAGCACTTTTCACGGTCCCCGGTGGGGATGATAATCACGGGAAGGCTGTGATGGTACACACGACATCTTTCAAGACCTTCTTCATCTCTAATGCTATTGCCCTTTTCACTTCTTTGGCTGTGGTGGTAGTTCAAATAACAGTTGTCAGAGGGGAGATAAAGTCCGAGAGGAGGGTTGTGGAGGTGATCAATAAGATGATGTGGTTAGCCTCTGTCTGTACCTCAATTTCATTCATTGCAGCATCTTATATAGTAGTTGGTCGGCGCAGCCAGTGGGCTGCAATCCTTGTTACTGTTGTTGGGGCGATTATAATGGGCGGTGTTCTTAGTACAATGACATACTATGTTGTCAAATCAAAACGTCACCGAAGAGAAAGGAAAAAAGAGAAGATCTCAAGGAATGGAACATATTCATGGCGTAATTCTGATTCTGAATCAGAAGTAAATCCAATTTATGCTATTTAA 1734 0.4383 MDHPLSEPATPTTPRPTLFLSTSGKALLVSNSNKSLVISNSGKRLDNTNSRKKYVKQVTGRHNDTELHLAAQRGDAAAVRQILAEIDDQMMGTLSGAEFDAEVAGIRSAIVNEVNELGETALFTAADKGRFDVVKELLPYTTKEALSLKNRSGFDTLHIAANQGHKDIVQLLLDYDPELIKTFAQSNATPLVSAATRGHADVVELLLLCDPSQLEIARSNGKNALHLAARQGYVDVVKILLGKDPQLARRTDKKGQTSLHMAVKGVNCEVVKLLLAADAASVMLPDKFGNTALHVATRKKRVEIVNELLLLPDTNVNALTRDHKTALDLAEALPISEEILEIKDSLIRYGAVKANDLNQPRDELRKTMTQIKKDVSFQLEQTRKTNKNVNGIAKELRKLHRAGINNATNSVTVVSVLFATVAFAALFTVPGGDDNHGKAVMVHTTSFKTFFISNAIALFTSLAVVVVQITVVRGEIKSERRVVEVINKMMWLASVCTSISFIAASYIVVGRRSQWAAILVTVVGAIIMGGVLSTMTYYVVKSKRHRRERKKEKISRNGTYSWRNSDSESEVNPIYAI 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04186 577 ProSiteProfiles Ankyrin repeat region circular profile. 220 241 - -
Trre13g04186 577 Pfam Ankyrin repeats (3 copies) 157 244 IPR002110 GO:0005515
Trre13g04186 577 Pfam Ankyrin repeats (3 copies) 252 317 IPR002110 GO:0005515
Trre13g04186 577 ProSiteProfiles Ankyrin repeat profile. 152 174 IPR002110 GO:0005515
Trre13g04186 577 SUPERFAMILY Ankyrin repeat 67 347 IPR036770 -
Trre13g04186 577 FunFam Ankyrin repeat-containing protein ITN1 213 333 - -
Trre13g04186 577 ProSiteProfiles Ankyrin repeat profile. 254 279 IPR002110 GO:0005515
Trre13g04186 577 FunFam Ankyrin repeat-containing protein ITN1 35 178 - -
Trre13g04186 577 Pfam Domain of unknown function 404 508 IPR026961 -
Trre13g04186 577 Gene3D - 177 378 IPR036770 -
Trre13g04186 577 MobiDBLite consensus disorder prediction 549 577 - -
Trre13g04186 577 ProSiteProfiles Ankyrin repeat profile. 220 252 IPR002110 GO:0005515
Trre13g04186 577 ProSiteProfiles Ankyrin repeat region circular profile. 254 279 - -
Trre13g04186 577 ProSiteProfiles Ankyrin repeat profile. 288 321 IPR002110 GO:0005515
Trre13g04186 577 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 33 557 - -
Trre13g04186 577 SMART ANK_2a 117 145 IPR002110 GO:0005515
Trre13g04186 577 SMART ANK_2a 288 318 IPR002110 GO:0005515
Trre13g04186 577 SMART ANK_2a 62 91 IPR002110 GO:0005515
Trre13g04186 577 SMART ANK_2a 152 181 IPR002110 GO:0005515
Trre13g04186 577 SMART ANK_2a 254 284 IPR002110 GO:0005515
Trre13g04186 577 SMART ANK_2a 186 215 IPR002110 GO:0005515
Trre13g04186 577 SMART ANK_2a 220 249 IPR002110 GO:0005515
Trre13g04186 577 Gene3D - 38 176 IPR036770 -
Trre13g04186 577 ProSiteProfiles Ankyrin repeat region circular profile. 152 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04186 Trre-Chr13 49622144 49625178 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04186 6 577 Miscellaneous Gene Families AT3G09550 74.150 0.0 857
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04186 - - gmx:100801840 869.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04186 13 49622144 49625178 Trre1g06327 1 66578353 66581110 ECH
Trre13g04186 13 49622144 49625178 Trre13g04186 13 49622144 49625178 ECH