Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05444 ATGGGTAATTCCTTTGGATGTTCCGCCTCCGGCGAGAGACTTGTATCGGCGGCAAGAGACGGCGACCTTGTTGAGGCAAAGATGCTTTTGAACTGTAACCCTTATCTTGCTAAATACTCCACTTTTGGTGGTCTTAATTCTCCTCTTCATTTTGCATCTGCAAAGGGTCATAACGAGATTGTTGCATTGTTGCTTGAGAATGGTGCTGATGTTAATTCAAGAAATTACTCTGGCCAGACGGCCTTGATGCAAGCTTGTAGATATGGGCATTGGGAAGTTGTACAGACACTTCTACTCTTCAGATGCAATGTTATGAGAGCAGATTATCTTAGTGGGAGGACAGCTCTTCACTTTGCAGCGATGAACGGGCATGTAAGATGTATTAGACTTGTTGTGGCCGACTTTGTTCCAAGTGCTCCTTATGAAGCAATACGTGCTCACTCAGATGCCGCTGACAAAGGTGGTGGATCAAATGTGAAAGGCAAACATGAACAAAGTGCCCTGTCCAAGTTTGTAAATAAAACAGCCGATGGTGGTATCACTGCCCTTCATATGGCTTCATTAAATGGATACTTTGATTGTGTGCAATTGCTACTCGATCTTAATGCAAATTTGTCTTCTGTGACATTTCATTATGGAACATCAATGGATTTAATAGGGGCTGGAAGCACTCCTTTGCATTACGCTGCTTGTGGGGGAAATTTAAAATGTTGTCAGATCCTTCTTGCAAGGGGTGCAAGTCGGACGTCTTTGAATTGCAACGGGTGGCTTCCTCTTGATATTGCTCGGATGTGGGGGCGTCATTGGCTTGAACCATTGTTGGCACCCAGTTCTGATGTCGCAACACCTGCTTTCCCTCATTCAAATTATTTGTCCTTGCCTCTCATGAGTGTTCTCAACATAGCCAGAGAGTTTGGATTGCAATCATCTTCAACTTCGTCTGATGAGATCGACTTTTGTGCTGTATGCCTAGAGAGGCCATGTTCAGTGGCAGCAGAAGGATGTGGACATGAACTTTGTGTCAGATGTGCGCTCTATCTTTGCTCGACAAGTAACATTTCTTCTGAAATGCTTGGCCCTCCTGGCTCTATCCCTTGCCCACTTTGTAGACATGGAATTGTCTCTTTTGTCAAGTTGCCAGGTTCGCAAGCAAAAGAAAATAAATTACATGTGTCCCTTGGTCTCTGTACTCCATGCATGCTACATCCACGAGACGTAGATCAGATGTCTCTTTCTCACACTCCAGAGATCCAAAGAAACTGTGTTGATTCCGTTCCTTCAGAGTTACTATGCCCCGTCACGTGCAGTCCATTTCCATCTATGGGATTACCTCTATGCACCTGCAATGACGGTTCGTGTCCATCATTTGAACCACGAGGTGTGGAAACACGAGATGAATCACCTCATCACTCACAGGTGTCAACAACAGATGAAGATAAAATTGAAGGCCCGAGACTGGATAAAACAACTTGCTCGAACATGTTTTGGGGTAGAAGAAGTTGCAGCAGGGAGCACCAATGCAATTCAGAAATAAATGCTTAA 1542 0.4449 MGNSFGCSASGERLVSAARDGDLVEAKMLLNCNPYLAKYSTFGGLNSPLHFASAKGHNEIVALLLENGADVNSRNYSGQTALMQACRYGHWEVVQTLLLFRCNVMRADYLSGRTALHFAAMNGHVRCIRLVVADFVPSAPYEAIRAHSDAADKGGGSNVKGKHEQSALSKFVNKTADGGITALHMASLNGYFDCVQLLLDLNANLSSVTFHYGTSMDLIGAGSTPLHYAACGGNLKCCQILLARGASRTSLNCNGWLPLDIARMWGRHWLEPLLAPSSDVATPAFPHSNYLSLPLMSVLNIAREFGLQSSSTSSDEIDFCAVCLERPCSVAAEGCGHELCVRCALYLCSTSNISSEMLGPPGSIPCPLCRHGIVSFVKLPGSQAKENKLHVSLGLCTPCMLHPRDVDQMSLSHTPEIQRNCVDSVPSELLCPVTCSPFPSMGLPLCTCNDGSCPSFEPRGVETRDESPHHSQVSTTDEDKIEGPRLDKTTCSNMFWGRRSCSREHQCNSEINA 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05444 513 FunFam E3 ubiquitin-protein ligase XBAT33 6 140 - -
Trre1g05444 513 SUPERFAMILY Ankyrin repeat 14 274 IPR036770 -
Trre1g05444 513 ProSiteProfiles Ankyrin repeat profile. 178 210 IPR002110 GO:0005515
Trre1g05444 513 ProSiteProfiles Ankyrin repeat profile. 221 253 IPR002110 GO:0005515
Trre1g05444 513 Pfam Ankyrin repeats (3 copies) 214 268 IPR002110 GO:0005515
Trre1g05444 513 ProSiteProfiles Ankyrin repeat profile. 77 109 IPR002110 GO:0005515
Trre1g05444 513 ProSiteProfiles Zinc finger RING-type profile. 320 370 IPR001841 -
Trre1g05444 513 ProSitePatterns Zinc finger RING-type signature. 335 344 IPR017907 -
Trre1g05444 513 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 305 391 IPR013083 -
Trre1g05444 513 ProSiteProfiles Ankyrin repeat region circular profile. 44 75 - -
Trre1g05444 513 SMART ANK_2a 221 253 IPR002110 GO:0005515
Trre1g05444 513 SMART ANK_2a 111 141 IPR002110 GO:0005515
Trre1g05444 513 SMART ANK_2a 77 106 IPR002110 GO:0005515
Trre1g05444 513 SMART ANK_2a 44 73 IPR002110 GO:0005515
Trre1g05444 513 SMART ANK_2a 178 207 IPR002110 GO:0005515
Trre1g05444 513 ProSiteProfiles Ankyrin repeat region circular profile. 111 132 - -
Trre1g05444 513 Gene3D - 156 283 IPR036770 -
Trre1g05444 513 SUPERFAMILY RING/U-box 316 376 - -
Trre1g05444 513 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 112 294 - -
Trre1g05444 513 Pfam Ankyrin repeats (many copies) 46 98 IPR002110 GO:0005515
Trre1g05444 513 Pfam Ankyrin repeat 112 130 IPR002110 GO:0005515
Trre1g05444 513 Pfam Ankyrin repeat 179 209 IPR002110 GO:0005515
Trre1g05444 513 Gene3D - 4 147 IPR036770 -
Trre1g05444 513 MobiDBLite consensus disorder prediction 459 484 - -
Trre1g05444 513 ProSiteProfiles Ankyrin repeat region circular profile. 221 247 - -
Trre1g05444 513 ProSiteProfiles Ankyrin repeat profile. 44 76 IPR002110 GO:0005515
Trre1g05444 513 ProSiteProfiles Ankyrin repeat region circular profile. 178 206 - -
Trre1g05444 513 ProSiteProfiles Ankyrin repeat profile. 111 132 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05444 Trre-Chr1 59996713 60000354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05444 46 293 Miscellaneous Gene Families AT1G07710 26.054 2.35e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05444 K19044 - gmx:100793886 963.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05444 1 59996713 60000354 Trre1g05444 1 59996713 60000354 ECH
Trre11g01352 11 13216030 13226902 Trre1g05444 1 59996713 60000354 PCT