Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre11g01352 | ATGGGAAATTCTTTTGGGTGTTCAGCTTCTGGTGAGAGATTGGTATCTGCTGCAAGAGATGGTGATTTGATTGAAGCAAAGATGCTTTTGGAATTCAATCCTGGTCTTGCAAAGTACTCAACTTTTGGTGGTCTTAATTCACCTCTTCATTTTGCAGCTTCTAAGGGTCATAACGAGATTGTGGCATTGTTGCTTGAGAATGGAGCTGATGTGAATTCAAGAAATTATTGTGGGCAGACAGCTTTGATGCAAGCTTGTAGACATGGTCATTGGGAAGTCGTTCAAACCCTTATGCTCTACCGATGTAATGTTATGAAAGCAGATTATCTCAGTGGAAAGACAGCTCTTCACTTTGCCGCTGTCAGTGGACACGTAAGATGCATTAGACTTGTTGTGGCTGACTTTGTTGCAAGTGTTCCTTATGAAATTCTACATGCTCGTGTCGATGCTGACGTGGGTGATGGATTAAATACGAAAAGAAAACAGGAACAAAGTGCGTTATGCAAGTTTGTAAACAAGACAGCCGATGCTGGTATTACTGCACTTCATATGGCGGCATTAAACGGATATTTTGATTGTGTACAACTGCTACTGGATCTTAATGCATATGTGTCAGCTTCAACATATCATTATGGAACATCTATGGATTTAATCGGAGCTGGAAGCACTCCATTGCATTATGCTGCTTGTGGTGGAAATTTAAAATGTTGTCAGATCCTCCTTTCAAAAGGCGCCTCTCGGATGGCTTTAAACTGCAACGGGTGGCTTCCACTTGATGTTGCTAGAATGTGGGGCCGTCATTGGCTTGAACCGTTGTTGGCACCCAGTTCAGATACCGTTATATCACCATTCCCTACTTCAAATTATTTGTCCTTGCCCCTCATGAGTGTTCTCAACATAGCCAGAGAATGTGGATTGCATTCATCTACGACCTCCTCCAATGAGATCGACTTCTGTGCTGTCTGCTTGGAGAGGCCATGTTCAGTGGCTGCAGAAGGATGTATGCATGAGCTTTGTGTAAGATGTGCACTCTATCTTTGCTCGACAGCCAATGTTTCTTCTGAAATGCATGGCCCTCCTGGTTCTATCCCTTGTCCCCTTTGTCGACATGGAATAATTTCTTTCGTCAAGTTACCAAGTTTCAAACCAAAAGAAAATAAATTACATGGATCACTCAGCATGTGTACACCATGCATACAACATCCACGCGATGTAGATCAACCATCGCTTTCTCATAATACACCAGAAATTCGAAAAAACCGGGTAGCTTCTGTTTCTTCCGAGATGCTTTGTCCTGTCACTTGTACACCGTTTCCGTCTGTAGCAATTCCTCTATGTACTACATGCAATGATGGTCCTTGTCCACCATTTGAACCTCAGGAAGATGAAACACAAGACGAATCACCTCGTCACTCACAAGCTTCGACAACAGATCAAGATAAAATGGAAGGGCCAAAACTTGTGAAAACTACATGTTCAAGTATGTTTTGGGGTAGAAGAAGTTGCAGCAGGGAGAATCAATGCAATTCAGAAATAAATGCTTGA | 1545 | 0.4246 | MGNSFGCSASGERLVSAARDGDLIEAKMLLEFNPGLAKYSTFGGLNSPLHFAASKGHNEIVALLLENGADVNSRNYCGQTALMQACRHGHWEVVQTLMLYRCNVMKADYLSGKTALHFAAVSGHVRCIRLVVADFVASVPYEILHARVDADVGDGLNTKRKQEQSALCKFVNKTADAGITALHMAALNGYFDCVQLLLDLNAYVSASTYHYGTSMDLIGAGSTPLHYAACGGNLKCCQILLSKGASRMALNCNGWLPLDVARMWGRHWLEPLLAPSSDTVISPFPTSNYLSLPLMSVLNIARECGLHSSTTSSNEIDFCAVCLERPCSVAAEGCMHELCVRCALYLCSTANVSSEMHGPPGSIPCPLCRHGIISFVKLPSFKPKENKLHGSLSMCTPCIQHPRDVDQPSLSHNTPEIRKNRVASVSSEMLCPVTCTPFPSVAIPLCTTCNDGPCPPFEPQEDETQDESPRHSQASTTDQDKMEGPKLVKTTCSSMFWGRRSCSRENQCNSEINA | 514 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre11g01352 | 514 | FunFam | E3 ubiquitin-protein ligase XBAT33 | 6 | 140 | - | - | |
| Trre11g01352 | 514 | Pfam | Ankyrin repeats (3 copies) | 215 | 266 | IPR002110 | GO:0005515 | |
| Trre11g01352 | 514 | ProSiteProfiles | Ankyrin repeat region circular profile. | 177 | 206 | - | - | |
| Trre11g01352 | 514 | SUPERFAMILY | RING/U-box | 318 | 375 | - | - | |
| Trre11g01352 | 514 | ProSitePatterns | Zinc finger RING-type signature. | 334 | 343 | IPR017907 | - | |
| Trre11g01352 | 514 | Gene3D | - | 143 | 268 | IPR036770 | - | |
| Trre11g01352 | 514 | ProSiteProfiles | Ankyrin repeat profile. | 44 | 76 | IPR002110 | GO:0005515 | |
| Trre11g01352 | 514 | ProSiteProfiles | Ankyrin repeat profile. | 111 | 132 | IPR002110 | GO:0005515 | |
| Trre11g01352 | 514 | ProSiteProfiles | Ankyrin repeat region circular profile. | 111 | 132 | - | - | |
| Trre11g01352 | 514 | ProSiteProfiles | Ankyrin repeat profile. | 177 | 209 | IPR002110 | GO:0005515 | |
| Trre11g01352 | 514 | SMART | ANK_2a | 220 | 249 | IPR002110 | GO:0005515 | |
| Trre11g01352 | 514 | SMART | ANK_2a | 177 | 206 | IPR002110 | GO:0005515 | |
| Trre11g01352 | 514 | SMART | ANK_2a | 44 | 73 | IPR002110 | GO:0005515 | |
| Trre11g01352 | 514 | SMART | ANK_2a | 77 | 106 | IPR002110 | GO:0005515 | |
| Trre11g01352 | 514 | SMART | ANK_2a | 111 | 141 | IPR002110 | GO:0005515 | |
| Trre11g01352 | 514 | ProSiteProfiles | Zinc finger RING-type profile. | 319 | 369 | IPR001841 | - | |
| Trre11g01352 | 514 | Gene3D | - | 7 | 138 | IPR036770 | - | |
| Trre11g01352 | 514 | PANTHER | ANKYRIN REPEAT FAMILY PROTEIN | 111 | 317 | - | - | |
| Trre11g01352 | 514 | ProSiteProfiles | Ankyrin repeat profile. | 220 | 252 | IPR002110 | GO:0005515 | |
| Trre11g01352 | 514 | Pfam | Ankyrin repeats (many copies) | 171 | 198 | IPR002110 | GO:0005515 | |
| Trre11g01352 | 514 | Pfam | Ankyrin repeats (many copies) | 46 | 97 | IPR002110 | GO:0005515 | |
| Trre11g01352 | 514 | SUPERFAMILY | Ankyrin repeat | 14 | 273 | IPR036770 | - | |
| Trre11g01352 | 514 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 303 | 387 | IPR013083 | - | |
| Trre11g01352 | 514 | ProSiteProfiles | Ankyrin repeat region circular profile. | 220 | 246 | - | - | |
| Trre11g01352 | 514 | MobiDBLite | consensus disorder prediction | 457 | 485 | - | - | |
| Trre11g01352 | 514 | ProSiteProfiles | Ankyrin repeat region circular profile. | 44 | 75 | - | - | |
| Trre11g01352 | 514 | MobiDBLite | consensus disorder prediction | 463 | 485 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre11g01352 | Trre-Chr11 | 13216030 | 13226902 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre11g01352 | 14 | 276 | Miscellaneous Gene Families | AT2G31820 | 29.104 | 3.54e-14 | 73.2 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre11g01352 | K19044 | - | gmx:100812809 | 904.434 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Trre11g01352 | 11 | 13216030 | 13226902 | Trre11g01352 | 11 | 13216030 | 13226902 | ECH | |
| Trre11g01352 | 11 | 13216030 | 13226902 | Trre1g05444 | 1 | 59996713 | 60000354 | PCT |