Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05340 ATGAAGAAAGTTGTGTTGAAGTTGGATATACATGATGACAAAATCAAGCAAAAAGCTATGAAGGCAGTCTCTGGACTTTCAGGGGTTGAGTCAGTTTCGGTGGACATGAAAGATCAGAAATTAACCTTAATTGGAGATATTGATCCGATACGTGTAGTGGCAAAGCTAAGGAAGATTTGTCACGCAGACATAATTTCAGTTGGACCAGCTAAAGAAGAAAAGAAAGATGATAAAAAGAAGGAAGATGATAAGAAGGATTCAACAAAAAAAGAAATTGTGATTGATCCTTTCATGTTCTATGGAACACCAACATATTCTGCCTATTATAATCATCAGATGAAACCACAATATAATCCTTATTACGGTGCTGTAAGCGTTGAAGAGGATCCTAATGGTTGTGTTATCATCTAA 411 0.3577 MKKVVLKLDIHDDKIKQKAMKAVSGLSGVESVSVDMKDQKLTLIGDIDPIRVVAKLRKICHADIISVGPAKEEKKDDKKKEDDKKDSTKKEIVIDPFMFYGTPTYSAYYNHQMKPQYNPYYGAVSVEEDPNGCVII 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05340 136 Coils Coil 71 91 - -
Trre1g05340 136 Pfam Heavy-metal-associated domain 9 58 IPR006121 GO:0046872
Trre1g05340 136 ProSiteProfiles Heavy-metal-associated domain profile. 1 68 IPR006121 GO:0046872
Trre1g05340 136 PANTHER COPPER TRANSPORT PROTEIN FAMILY-RELATED 2 133 - -
Trre1g05340 136 SUPERFAMILY HMA, heavy metal-associated domain 1 59 IPR036163 GO:0046872
Trre1g05340 136 CDD HMA 21 58 IPR006121 GO:0046872
Trre1g05340 136 Gene3D - 1 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05340 Trre-Chr1 59244218 59245068 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05340 - - gmx:100306170 175.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05340 1 59244218 59245068 Trre11g01228 11 11816746 11817427 PCT