Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01228 ATGAAGAATGTAGTATTGAAGATTGATTTTCATAATGATAAAATCAAACAAAAAGTTATGAAAACAGCATCTAGCCTTTCAGGGGTTGAATCACTATCAATAGACATGAATGAAAAGAAATTAACATTACTAGGAGACATTGATCCAGTAAAGGCAGTTTCCAAGCTAAGAAAATTTTGTCATACTGAAATTGTTTCAGTTGGACCTTCAAAACCAAAAGAGGAGAAAAAGTCAGAGGATAAACCCTTTGAAGGTTATCCATTCTATTATAATATTCAACCTTCACAATTTATTCAAGATTTCTACTATATTTGA 315 0.3016 MKNVVLKIDFHNDKIKQKVMKTASSLSGVESLSIDMNEKKLTLLGDIDPVKAVSKLRKFCHTEIVSVGPSKPKEEKKSEDKPFEGYPFYYNIQPSQFIQDFYYI 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01228 104 PANTHER COPPER TRANSPORT PROTEIN FAMILY-RELATED 3 79 - -
Trre11g01228 104 Pfam Heavy-metal-associated domain 11 57 IPR006121 GO:0046872
Trre11g01228 104 Gene3D - 1 72 - -
Trre11g01228 104 ProSiteProfiles Heavy-metal-associated domain profile. 1 68 IPR006121 GO:0046872
Trre11g01228 104 SUPERFAMILY HMA, heavy metal-associated domain 2 59 IPR036163 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01228 Trre-Chr11 11816746 11817427 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01228 - - mtr:25481600 119.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g01228 11 11816746 11817427 Trre11g01228 11 11816746 11817427 ECH
Trre1g05340 1 59244218 59245068 Trre11g01228 11 11816746 11817427 PCT