Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05306 ATGTCTCAGGTTGCGGCTACTCGATCCATTCAAACCTCTCTCTTACGCCCCACTTCAGGATCTACACAAGAAAGGTCTCAAACATTGTTAAAGCCTCCAACTTTTTCCTCCAAAAATTTTCCATCACAGGGTAACAATTCCCCCAATGTTTGCATCAGAAACTCTCCAATCAATGCAAGAAAATCTGCATCTGCTGAAGTTATTCCTGTCTCACCTGAAGATGATTCAAAGATTGAGGAGGAGTTACAGAAGTTGCGTGGTATTCAGCAATATGGTGATGCTTCTGGTGGAATGTGGTCAAAGCCAACTGTTAGAAGAAAGACAAAGATTGTTTGTACTATTGGTCCTTCTACCAATACAAAGGAAATGATTTGGAAGTTGGCTGAGGCTGGAATGAATGTTGCTCGTATGAATATGTCTCATGGAGATCATGCTTCTCATAAGAAAGTTATTGATTTGGTTAAAGAATATAATGCACAATCTAAGGACAATGTAATTGCAATTATGCTTGACACCAAGGGTCCCGAGGTTAGGAGTGGGGATTTGCCACAACCAATCCTGTTAAAAACTGGGCAGGAATTCACTTTTACTATCAAGAGTGGTGTTGGAACGGCTGATTGTGTTAGTGTGAACTATGATGATTTTGTCAATGATGTTGAAGAAGGGGACATGCTTCTTGTTGATGGTGGTATGATGTCTTTCTTGGTTAAGTCCAAAACTGCGGATTCTGTGAAATGTGAAGTTATTGACGGAGGAGAGCTTGCATCAAGGAGACATTTGAATGTTAGAGGAAAGAGTGCAACATTGCCTTCGATCACTGAGAAGGATTGGGATGATATCAAATTTGGAGTGGATAATGAAGTTGATTTCTATGCTGTTTCTTTCGTTAAGGATGCACAAGTAGTTCATGAACTAAAGAATTATTTGAAAAGCTGTGGTGCTGATATTCATGTAATTGTAAAAATTGAAAGTGCAGACTCTATACCGAACTTGCATTCAATTATTACCGCATCTGATGGGGCTATGGTTGCAAGAGGAGATCTTGGTGCAGAACTCCCTATTGAGGAGGTTCCTCTTTTGCAGGAAGAAATAATTAGGATATGCCGTAGCATGGGAAAGGCCGTTATTGTGGCAACAAACATGCTTGAAAGCATGATTGTTCACCCGACACCAACCAGAGCTGAGGTATCTGATATTGCAATTGCTGTTCGAGAAGGTTCCGATGGAATAATGCTTTCTGGAGAAACTGCTCATGGAAAGTTTCCAATAAAAGCTGCAAAAGTAATGCACACGGTAGCATTACGGACTGAAGCCGCTTTACCAAGTGGGCAGATGCCTGCACCTAATATTGGCCAAGTATTCAAGAACCACATGAGCGAGATGTTTGCGTACCATGCAACCATGATGTCTAATACCCTTGGAACATCAACTGTTGTCTTCACTAGATCAGGCTTCATGGCTATTTTATTGAGCCATTATCGACCCTCAGGCACCATATTTGCATTTACTGATCAGAAAAGAGTACAACAGAGGTTGGCTTTGTATCAAGGAGTCTGTCCTATTTACATGGAATTCTCTGATGACTCGGAAGAGACATTCACAAAAGCCTTGGATTTGTTGCAGAAAAATGGAATGGTTAAAGAAGGAGAAGAAGTAGCCCTAGTACAAAGTGGAAGGCAACCTATATGGAGGTTCCACTCTACTCACAATATCCAGGTCCGAACAGTAGCTGCCACAAACTAA 1743 0.4114 MSQVAATRSIQTSLLRPTSGSTQERSQTLLKPPTFSSKNFPSQGNNSPNVCIRNSPINARKSASAEVIPVSPEDDSKIEEELQKLRGIQQYGDASGGMWSKPTVRRKTKIVCTIGPSTNTKEMIWKLAEAGMNVARMNMSHGDHASHKKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDLPQPILLKTGQEFTFTIKSGVGTADCVSVNYDDFVNDVEEGDMLLVDGGMMSFLVKSKTADSVKCEVIDGGELASRRHLNVRGKSATLPSITEKDWDDIKFGVDNEVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRICRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGSDGIMLSGETAHGKFPIKAAKVMHTVALRTEAALPSGQMPAPNIGQVFKNHMSEMFAYHATMMSNTLGTSTVVFTRSGFMAILLSHYRPSGTIFAFTDQKRVQQRLALYQGVCPIYMEFSDDSEETFTKALDLLQKNGMVKEGEEVALVQSGRQPIWRFHSTHNIQVRTVAATN 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05306 580 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 99 440 IPR015813 GO:0003824
Trre1g05306 580 FunFam Pyruvate kinase 271 436 - -
Trre1g05306 580 Gene3D - 449 577 IPR036918 -
Trre1g05306 580 PANTHER PYRUVATE KINASE 88 554 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Trre1g05306 580 MobiDBLite consensus disorder prediction 1 54 - -
Trre1g05306 580 FunFam Pyruvate kinase 176 269 - -
Trre1g05306 580 ProSitePatterns Pyruvate kinase active site signature. 316 328 IPR018209 GO:0004743|GO:0006096
Trre1g05306 580 Pfam Pyruvate kinase, alpha/beta domain 464 556 IPR015795 -
Trre1g05306 580 PRINTS Pyruvate kinase family signature 164 180 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Trre1g05306 580 PRINTS Pyruvate kinase family signature 345 369 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Trre1g05306 580 PRINTS Pyruvate kinase family signature 318 344 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Trre1g05306 580 PRINTS Pyruvate kinase family signature 370 394 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Trre1g05306 580 PRINTS Pyruvate kinase family signature 288 302 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Trre1g05306 580 PRINTS Pyruvate kinase family signature 395 413 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Trre1g05306 580 PRINTS Pyruvate kinase family signature 414 430 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Trre1g05306 580 SUPERFAMILY PK C-terminal domain-like 425 576 IPR036918 -
Trre1g05306 580 FunFam Pyruvate kinase 437 557 - -
Trre1g05306 580 Gene3D - 176 269 IPR015806 GO:0004743|GO:0006096
Trre1g05306 580 NCBIfam pyruvate kinase 106 576 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Trre1g05306 580 Gene3D - 108 433 IPR040442 -
Trre1g05306 580 Pfam Pyruvate kinase, barrel domain 106 442 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Trre1g05306 580 SUPERFAMILY PK beta-barrel domain-like 175 266 IPR011037 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05306 Trre-Chr1 59009130 59013115 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05306 K00873 - gmx:100809327 1016.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05306 1 59009130 59013115 Trre1g05306 1 59009130 59013115 ECH
Trre11g00956 11 8366978 8373108 Trre1g05306 1 59009130 59013115 PCT