Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00956 ATGTCTCAAGTTGTTGCCACAAGATCCATTCAAACCACACTTCCTAGTTCTGGATCTACACATGATAGAGCTCACAAGTTGTTAAAGGTTCCAACTTTTGCTTCTAAAGTGTTCCAACAAAAAAGGAATAAGTGTTCTAAATTGGTGTTTAGAAGTTTTCATGTCAGTGCTATAAAATCAACTGCTGTTGAAGTTGTTCCTGTTTCACCTGAAGATGATATAAAGATTGAGGAGCATTTGCAACGTATACGTGGGGTGCAGCCATTTGGTGATACTTCAAATGGAATATGGTCGAAGCCGACTTTTAAGCGTAAGACGAAGATAGTATGTACTATTGGACCTTCTACCGATACTAAGGAAATGATTTGGAAGTTGGCTGAGGCTGGTATGAATGTTGCTCGCCTCAATATGTCTCATGGTGATCATGCTTCTCATCAGAAAGTTATTGACTTGGTTAAAGAATATAATGCACAATCTAAGGACAATGTTATTGCAATTATGCTTGACACTAAGGGTCCTGAGGTTAGGAGTGGGGATTTGCCACAACCAATCAATTTAACAACCGGGCAGGAGTTCACCTTTACTATTAAGAGAGGTGTTGGAACTGCGGATTGTGTCAGTGTCAACTATGATGATTTTGTCAATGATGTAGCAGTCGGGGACATGATTCTTGTTGATGGCGGCATGATGTCTATGGCTGTTAAGTCTAAGACAGAGAGTTCAGTGAAATGTGAAGTTGTTGATGGAGGAGAGCTTAAGTCAAGGAGACATTTGAATGTTCGAGGAAAAAGTGCAACATTGCCTTCAATAACTGAGAAGGATTGGGATGATATCAAATTCGGAGTGGATAACAAAGTTGATTTCTATGCTGTTTCCTTTGTTAAGGATGCCGAAGTCGTACACGAACTGAAGAATTATTTGAAGAGCTGTGATGCTGATATACATGTCATTGTAAAAATTGAAAGCGCGGATTCTATACCAAATTTGAATTCAATTATCACCGCATCTGATGGGGCTATGGTTGCCAGAGGAGATCTTGGTGCCGAGCTCCCTATCGAAGAGGTTCCTCTTTTACAGGAAGAGATAATTAACTTGTGCCGTAGCATGGGAAAGGCTGTGATTGTTGCAACGAATATGCTTGAAAGCATGATTGTTCACCCAACTCCAACAAGAGCTGAGGTATCCGATATAGCTATTGCCGTTCGAGAAGGTTCTGATGGAATAATGCTTTCTGGAGAAACCGCTCATGGGAAGTTCCCACTAAAAGCAGTGAAAGTGATGCACACAGTAGCGTTGCGGACAGAAGCAACCATACAAGGTGGACAAATGCCACCTAATATTGGTCAAGTGTTTAAGAATCACATGAGTGAGATGTTTGCATACCATGCAACAATGATGTCTAACACCCTTGGAACCTCTACTGTTGTCTTTACTCGAACCGGTTTCATGGCTGTCCTATTGAGCCACTATCGTCCTTCTGGAACAATATTTGCTTTCACAGACGAGAAGAGGGTACAACAAAGATTGGCTTTGTATCAAGGAGTTTGTCCTGTATACATGGAGTTCAGCGATGATTCCGAAGAAACTTTCAGAAGAGCCTTGGATTTCCTACAGAAGCAAGGAATGGTGAAGGTAGGAGAAGAAGTTGCACTTGTACAAAGTGGTAGGCAACCCATTTGGAGGTTCCAATCAACTCACAATATCCAAGTCAGGAAAGTTTAA 1722 0.4123 MSQVVATRSIQTTLPSSGSTHDRAHKLLKVPTFASKVFQQKRNKCSKLVFRSFHVSAIKSTAVEVVPVSPEDDIKIEEHLQRIRGVQPFGDTSNGIWSKPTFKRKTKIVCTIGPSTDTKEMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDLPQPINLTTGQEFTFTIKRGVGTADCVSVNYDDFVNDVAVGDMILVDGGMMSMAVKSKTESSVKCEVVDGGELKSRRHLNVRGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAEVVHELKNYLKSCDADIHVIVKIESADSIPNLNSIITASDGAMVARGDLGAELPIEEVPLLQEEIINLCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGSDGIMLSGETAHGKFPLKAVKVMHTVALRTEATIQGGQMPPNIGQVFKNHMSEMFAYHATMMSNTLGTSTVVFTRTGFMAVLLSHYRPSGTIFAFTDEKRVQQRLALYQGVCPVYMEFSDDSEETFRRALDFLQKQGMVKVGEEVALVQSGRQPIWRFQSTHNIQVRKV 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00956 573 MobiDBLite consensus disorder prediction 1 20 - -
Trre11g00956 573 FunFam Pyruvate kinase 435 554 - -
Trre11g00956 573 PANTHER PYRUVATE KINASE 98 551 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Trre11g00956 573 Pfam Pyruvate kinase, alpha/beta domain 461 553 IPR015795 -
Trre11g00956 573 Gene3D - 106 431 IPR040442 -
Trre11g00956 573 PRINTS Pyruvate kinase family signature 412 428 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Trre11g00956 573 PRINTS Pyruvate kinase family signature 368 392 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Trre11g00956 573 PRINTS Pyruvate kinase family signature 393 411 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Trre11g00956 573 PRINTS Pyruvate kinase family signature 162 178 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Trre11g00956 573 PRINTS Pyruvate kinase family signature 343 367 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Trre11g00956 573 PRINTS Pyruvate kinase family signature 286 300 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Trre11g00956 573 PRINTS Pyruvate kinase family signature 316 342 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Trre11g00956 573 Pfam Pyruvate kinase, barrel domain 104 439 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Trre11g00956 573 ProSitePatterns Pyruvate kinase active site signature. 314 326 IPR018209 GO:0004743|GO:0006096
Trre11g00956 573 MobiDBLite consensus disorder prediction 1 21 - -
Trre11g00956 573 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 96 438 IPR015813 GO:0003824
Trre11g00956 573 SUPERFAMILY PK C-terminal domain-like 422 573 IPR036918 -
Trre11g00956 573 FunFam Pyruvate kinase 269 434 - -
Trre11g00956 573 NCBIfam pyruvate kinase 104 572 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Trre11g00956 573 SUPERFAMILY PK beta-barrel domain-like 173 264 IPR011037 -
Trre11g00956 573 Gene3D - 174 267 IPR015806 GO:0004743|GO:0006096
Trre11g00956 573 Gene3D - 446 573 IPR036918 -
Trre11g00956 573 FunFam Pyruvate kinase 174 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00956 Trre-Chr11 8366978 8373108 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00956 K00873 - gmx:100818193 1011.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g00956 11 8366978 8373108 Trre11g00956 11 8366978 8373108 ECH
Trre11g00956 11 8366978 8373108 Trre1g05306 1 59009130 59013115 PCT