Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05226 ATGGCAGCAAAGCGCGTGTATCAAGTTTGGAAAGGAAGTAATAAATTCATATTTGGAGGGAGGTTGATATTTGGGCCTGATGCTAGGTCCGTGCTTATCACTTTGTCGCTGATTATTGTTCCAGTTATCATCTTTTGTGTATTTGTAGCAAGGCATCTTCGACATGAATTTTCTTCATATTATTCAGGATATGCTATTTTAGTAGTGGCAATTCTCTTTACTGTCCATGTCCTGGTGCTTCTATGTCTTACTTCCGCACGTGATCCGGGTATCATCCCTAGGAATTCACATCCACCAGAAGAAGAGTTTCGTTACGAGTCTTCTGGCGTAGCCGGACAACAAACGCCAACCCTTCAGTTCCCACGAACAAAAGAAGTAATGGTCAATGGCTTTCCTGTAAAGGTGAAATATTGTGAAACTTGTATGCTGTATCGCCCTCCTCGTTGTTCGCATTGCTCCATATGCAACAACTGTGTTGAACGTTTTGATCACCATTGCCCTTGGGTGGGCCAATGCATCGGACTGAGAAACTACCGTTACTTCTTTCTGTTTGTTTCTTCCGCAACTATTCTGTGCATCTATGTGTTTTCCTTCTCAGCATTTTACATAAAGGTTCTGATGGATAATAACGATATCGGCACAGTGTGGAAGGCGATAAAAGAATCCCCCGCATCTGTTGTTTTAATGGCTTATTGTTTCATCTCTTTGTGGTTTGTTGGTGGACTAACTGGTTTTCATTTGTACCTTATAGGCTCAAACCAGACTACGTATGAAAACTTCCGCTATAGAGCTGATGGAAGGATCAATGTTTTTAATCAAGGCTGTTTAAATAATTTTCTGGAAGTGTTTTGCACAGAAATAAGACCCTCAAGGAACAATTTCAGGGCTTTTGTTCAAGAGGAAGTACAAAGGCCGCTGAATACGGTTGTTGTCCGGGGATGTGAACCAAATGATTTGGATGGAGATCGTCGTCCTAAGGTTGAAGATGATCTAGATATCGGTGAAGATTTATTGAAGATATCACAGCGTAGGAATGTTGAAGAACTTGGCGAAGATATTCGAAGTAGAGGAAACAATGGTGCACCCTATAATACATCTGAACCTGATTCAATTTTGTCGTCAGATCATCGAGCTACCACAATACGATCAGATGCTAGGCACTCGAGTTGGGAAAGGAGTGGAAATTGGGAAATTGCACAAGATGCCTTTGCCAATTCAAATGTCACCGAAAGCAGAAACTATGTCACATCAAAGGAAATACACCAATGA 1269 0.4137 MAAKRVYQVWKGSNKFIFGGRLIFGPDARSVLITLSLIIVPVIIFCVFVARHLRHEFSSYYSGYAILVVAILFTVHVLVLLCLTSARDPGIIPRNSHPPEEEFRYESSGVAGQQTPTLQFPRTKEVMVNGFPVKVKYCETCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIGLRNYRYFFLFVSSATILCIYVFSFSAFYIKVLMDNNDIGTVWKAIKESPASVVLMAYCFISLWFVGGLTGFHLYLIGSNQTTYENFRYRADGRINVFNQGCLNNFLEVFCTEIRPSRNNFRAFVQEEVQRPLNTVVVRGCEPNDLDGDRRPKVEDDLDIGEDLLKISQRRNVEELGEDIRSRGNNGAPYNTSEPDSILSSDHRATTIRSDARHSSWERSGNWEIAQDAFANSNVTESRNYVTSKEIHQ 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05226 422 MobiDBLite consensus disorder prediction 349 390 - -
Trre1g05226 422 MobiDBLite consensus disorder prediction 358 378 - -
Trre1g05226 422 ProSiteProfiles DHHC domain profile. 136 186 - -
Trre1g05226 422 PANTHER ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN 38 301 - -
Trre1g05226 422 Pfam DHHC palmitoyltransferase 136 261 IPR001594 GO:0016409
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05226 Trre-Chr1 58252148 58255042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05226 65 286 Lipid Metabolism Gene Families AT4G22750 29.876 1.42e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05226 K16675 - gmx:100820208 729.169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g01049 11 9581189 9589109 Trre1g05226 1 58252148 58255042 PCT