Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01049 ATGGCTGCCAAACGCGTTTATGAAGCATGGAAAGGAAGTAATAAATTCCTATTTGGAGGAAGGTTGATATTTGGGCCTGACGCTAAGTCATTGCTTTTCAGTTTGTTGCTGGTGATAGCTCCCGTTATCATCTTTTGTGTATTTGTAGCAAGACATCTTCGGCATGAATTTTCTTCATATAATGCAGGATATGCTATTTTGGTGGTGGCAGTTCTCTTCAATATTTATGTACTGATACTTCTCTTTCTTACTTCTGCACGCGATCCGGGCATTATACCAAGGAATTTACATCCACCCGAGGAAGAGTTCCGTTATGACTCGTCCGTTTCCATTGATATTGGGGGACGTCAAACACCAAGCCTTCAGTTCCCTCGAACAAAAGAAGTAATGGTCAATGGCCATCCTGTAAGAGTGAAGTATTGTGATACCTGTATGTTGTATCGTCCTCCTCGTTGCTCACATTGCTCCATTTGCAACAATTGTGTTGAACGTTTTGATCATCATTGCCCTTGGGTTGGCCAATGTATTGGACTGAGAAACTACCGTTACTTCTTTATGTTTGTTTCTTCGGCAACTCTTCTCTGCATCTATGTGTTTTCGTTCTCAGCTTATTACATCAAGGTTCTGATGGATCATAATCATGGGACAGTGTGGAAGGCAATGAAAGAATCCCCTGCATCTGTTGTTCTAATGGCATATTGTTTCATCTCTTTGTGGTTTGTTGGTGGACTAACTGGCTTTCATTTGTACCTTATTGGCACAAGCCAGACCACCTATGAAAATTTTCGATACAGAGCAGATAACAGAACGAATGTTTACCATCGGGGGTGTTTAAATAATTTTCTGGAAGTATTTTGTACAAAAGTCAAGCCTTCGAGGAACAATTTTCGGGCTCTTGTTCAAGAAGAGGAGGTACAGAGGCCACCTCCTCGGGTTGTTAACCGGGAACCTGAACAAGAATTGGGAGGAGATGCTCGTTCTAAGGTCGAAGATGATCTAGACATAGGTGAAGACCTATTAAAGATATCACAGCGGCGAAATATTGAAGAAATTGATGAAGATATTCGGAGCAGAGGGAGCAATGGACCTTACAATAACGCATCTGAAGGTGATTCAGTTTTGGGTTCAGATCGTCGAGCTCCAACAGTTCGACCAGAAGAAAGACACTCAAGTTGGAGAAGAAGCGGAAGCTGGGAAATTGCACCAGATGTACTAGCCAATTCTAATGTAACTGAAACTAGAAGCTATGTTTCTGCGCGTCAATGA 1266 0.4202 MAAKRVYEAWKGSNKFLFGGRLIFGPDAKSLLFSLLLVIAPVIIFCVFVARHLRHEFSSYNAGYAILVVAVLFNIYVLILLFLTSARDPGIIPRNLHPPEEEFRYDSSVSIDIGGRQTPSLQFPRTKEVMVNGHPVRVKYCDTCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIGLRNYRYFFMFVSSATLLCIYVFSFSAYYIKVLMDHNHGTVWKAMKESPASVVLMAYCFISLWFVGGLTGFHLYLIGTSQTTYENFRYRADNRTNVYHRGCLNNFLEVFCTKVKPSRNNFRALVQEEEVQRPPPRVVNREPEQELGGDARSKVEDDLDIGEDLLKISQRRNIEEIDEDIRSRGSNGPYNNASEGDSVLGSDRRAPTVRPEERHSSWRRSGSWEIAPDVLANSNVTETRSYVSARQ 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01049 421 Pfam DHHC palmitoyltransferase 138 263 IPR001594 GO:0016409
Trre11g01049 421 ProSiteProfiles DHHC domain profile. 139 189 - -
Trre11g01049 421 PANTHER ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN 39 306 - -
Trre11g01049 421 MobiDBLite consensus disorder prediction 300 328 - -
Trre11g01049 421 MobiDBLite consensus disorder prediction 380 394 - -
Trre11g01049 421 MobiDBLite consensus disorder prediction 352 398 - -
Trre11g01049 421 MobiDBLite consensus disorder prediction 308 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01049 Trre-Chr11 9581189 9589109 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01049 65 309 Lipid Metabolism Gene Families AT4G22750 27.203 8.67e-15 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01049 K16675 - gmx:100818705 744.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g01049 11 9581189 9589109 Trre11g01049 11 9581189 9589109 ECH
Trre11g01049 11 9581189 9589109 Trre1g05226 1 58252148 58255042 PCT