Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04656 ATGAATTTCTTCAAATCCGTTTTCTCAGACGATCCAGATCCACCTCAAACCGAATCCCAACCCGAATCCGACAATGCTGACCCGATTCCCATTTTCTCCGCCGCCGATGACGCTTGGAACTTCGGCGGACTCATCAAAACCCTCACAGCCAAATCCGAATCCATAATCGAAACCTACCGTCGCGATCTACAGGAATTCAGCACCGGATTGAAGAACGAGATCGAGGTTGCTCAAGATTCAGTTGGTGAGATCGGAAGCACCGTAATCAAAGGAACTGCTCAGATCATATCTCAAGGTAAAGAAGCAATCCTCGCCGTTAATCTCGATTCCGATAATGCCACTGCCACCACCAATCGCGATTCGAATAGCTTAGATTCGAAGCGATATAGTAGATTTGATGCTCAGATTGGTGCAATTCAGGGTGATGTTGGGACTTACACTGAGGTACCTGAGGATTTGGATGAATTCAATCAGTGGAAATTAGGGTTTGTATTGGATGGGAAAAGTGATGAAATGGAGAGTCTTTTTAGGGAGAACGATGCAATGGAGAGTGTTTATAAAAGGGTTGTTCCAAATAGTATTGATCATCAAACTTTTTGGTATAGGTATTATTATAAGGTTTATAGGCTTAAGAAAGCTGAAGATGTTAGGGCTAAGCTTGTTAGAAGAATATCCAAGGATGAAGAGGATTTGAGTTGGGATGTTGAAGAAGATGATGATGATGATAATGACGACGATGGTGTGGAGGAAAAGGAGAAGGAGAAGGAGAATGAAGGTGAAAATTTGGGGGAAAATGTAGATACTGATTTGAAAATTGGTAGTAGCTCTAGCTCTGGTTCTAGTGATGAGAAGAGATTGAATGTGGAAGAGGTGAAGCATTCAGTGTCTAAAGAAGAAAAGATAGACGGTTCAATGCAAAGCAATGAACTTGGTAATGAGATGGATAAGTCTGTTGAAGAATCGCAAGTTGTTGTGAAAGCTGAAGTTGTTAATGAGTTGGGTGGTGGAAATGAGGAAAGGAATGAGGATGCTGGTGTTGATAAAACATCAAAGCCAGTAGTTGATGGTGCTGCGAGTACGAACAAGGATGTTTCTGTGGGTGAGTCTGATGAGAAAATGATAGAAGTGGAAAGAAATGCTGCTGATGTAAAATCTTCTAGTAGTAAGAATAATGAGTTGTCAGTGGTTGGAAGTCAGCACATCGAAAATGAGGAGGAAGATGATCTTGGGTGGGATGATATCGAGGATCTGAGCAGTATCGATGATAAGAAAGCAACTCAATCTCAGAGTCAGAGTGGTAGCATCAGCAAGGATGATTTGCGGAAGCGCCTTAGTACTGCAGAGGAAGATGAAGACTTGAGTTGGGACATTGAAGATGATGATGATGATGAGCCTGCGAAGGCTTGA 1407 0.4229 MNFFKSVFSDDPDPPQTESQPESDNADPIPIFSAADDAWNFGGLIKTLTAKSESIIETYRRDLQEFSTGLKNEIEVAQDSVGEIGSTVIKGTAQIISQGKEAILAVNLDSDNATATTNRDSNSLDSKRYSRFDAQIGAIQGDVGTYTEVPEDLDEFNQWKLGFVLDGKSDEMESLFRENDAMESVYKRVVPNSIDHQTFWYRYYYKVYRLKKAEDVRAKLVRRISKDEEDLSWDVEEDDDDDNDDDGVEEKEKEKENEGENLGENVDTDLKIGSSSSSGSSDEKRLNVEEVKHSVSKEEKIDGSMQSNELGNEMDKSVEESQVVVKAEVVNELGGGNEERNEDAGVDKTSKPVVDGAASTNKDVSVGESDEKMIEVERNAADVKSSSSKNNELSVVGSQHIENEEEDDLGWDDIEDLSSIDDKKATQSQSQSGSISKDDLRKRLSTAEEDEDLSWDIEDDDDDEPAKA 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04656 468 SMART wurzfinal6 159 211 IPR005607 -
Trre1g04656 468 Coils Coil 210 230 - -
Trre1g04656 468 Pfam BSD domain 159 215 IPR005607 -
Trre1g04656 468 MobiDBLite consensus disorder prediction 1 29 - -
Trre1g04656 468 Gene3D BSD domain 119 221 IPR035925 -
Trre1g04656 468 MobiDBLite consensus disorder prediction 381 398 - -
Trre1g04656 468 SUPERFAMILY BSD domain-like 129 216 IPR035925 -
Trre1g04656 468 MobiDBLite consensus disorder prediction 436 450 - -
Trre1g04656 468 MobiDBLite consensus disorder prediction 250 265 - -
Trre1g04656 468 MobiDBLite consensus disorder prediction 365 379 - -
Trre1g04656 468 ProSiteProfiles BSD domain profile. 159 211 IPR005607 -
Trre1g04656 468 MobiDBLite consensus disorder prediction 333 349 - -
Trre1g04656 468 MobiDBLite consensus disorder prediction 268 282 - -
Trre1g04656 468 MobiDBLite consensus disorder prediction 283 304 - -
Trre1g04656 468 MobiDBLite consensus disorder prediction 12 26 - -
Trre1g04656 468 PANTHER SYNAPSE-ASSOCIATED PROTEIN 11 412 - -
Trre1g04656 468 MobiDBLite consensus disorder prediction 451 468 - -
Trre1g04656 468 MobiDBLite consensus disorder prediction 232 468 - -
Trre1g04656 468 MobiDBLite consensus disorder prediction 232 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04656 Trre-Chr1 52658509 52659915 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04656 - - lang:109354531 403.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g04656 1 52658509 52659915 Trre1g04656 1 52658509 52659915 ECH
Trre13g03736 13 45274964 45276178 Trre1g04656 1 52658509 52659915 PCT