Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03736 ATGAATTTCATCAAATCCGTTTTCTCCGACGAATCGGACCCTCCACGATCCGAATCAAACAACGCTTCCTCCACCGACTCACCAAACGCGCCGCCTTCCGATTCTTCTCCGTCACACCACAACCGTAATCCTTCCGCTTCATGGAAGAACCTACTCAAAACCCTAACCGAAAAATCTGAATCTGTAATCGAAATTTACCGTCGCGATCTTCAAGAATTCGGTACAGGTTTGAAGAAAGAGATAGAAGTTGCACATGATTCTCTTGAATCAGTTGGACACGTCATCGATCAATTCGGAAATACCGTTATTAAAGGAACGGCTCAGATTATATCTCAAGGAAAAGAAGCAATTCTTGAATCTGATTCTGTTCAGAAGAAGAATAAGAAACAGAGTAGTTTGAATTCGAAACTTTATAGTAGATTTGATGCACAAATTCGTGCAATTCAAGGTGATGTTAATACTTACATTGAAGAACCTTTTGATTTGGAGCGTTATAATAAGTGGAAATTGGAGTTTACTTTGGAAGGGAAAAATGAAGAAATTGAAGGATTATTAAAAGAGAATGATGAAATGGAGAGTGTTTATAAAAGGGTTGTTCCTAATAATGTTGATAGGGAAACTTTCTGGTTAAGGTATTATTATAAGGTTTACAAGCTTAAGAAAGCTGAGGATATTAGGGCTAAGCTTGTTAGACGAATGTCGAGGGAAGAGGATGAAGAGTTGAGTTGGGATGTTGAAGATGAGGAGTATGTGGATGATGATGATGATGATGATGAGGAGGAGGAGGAGGACGAGGAGGAAGAGGAATCTAAGGTTGAAAAGAGAGATAGTTTATTGCAAAACAAGATGATGGAGGAATCAAAAGTTGATGAGAATTTGGAGGGTGTTCAAGAGAAAGGTGATGGAAGTAAAGTGGATAATGTTAATGATTCTGAAGCGGATTCTGATAAGAAAATGACAATGGTGAGTAGTGTCGATGATGGAAAGTCTATACCGGTTGAAAGTAAGAACTTGAAGCATAAGGAGGAGGAGAAAGAGCTTGAGTGGGATGAGATTGAGGATCTTAGTAGCATTCATGAAAAGAAGGCAATGGGGGAGAGTGGTAGCCCAAGGAAAGTTGATTTGCTGAAGCGCCTGAGTTCTGCGGCCGAAGAAGAAGATTTGAGTTGGGATATTGAAGATGATGATGATGATGATGAGCCTGCCAAGGCTTGA 1215 0.3984 MNFIKSVFSDESDPPRSESNNASSTDSPNAPPSDSSPSHHNRNPSASWKNLLKTLTEKSESVIEIYRRDLQEFGTGLKKEIEVAHDSLESVGHVIDQFGNTVIKGTAQIISQGKEAILESDSVQKKNKKQSSLNSKLYSRFDAQIRAIQGDVNTYIEEPFDLERYNKWKLEFTLEGKNEEIEGLLKENDEMESVYKRVVPNNVDRETFWLRYYYKVYKLKKAEDIRAKLVRRMSREEDEELSWDVEDEEYVDDDDDDDEEEEEDEEEEESKVEKRDSLLQNKMMEESKVDENLEGVQEKGDGSKVDNVNDSEADSDKKMTMVSSVDDGKSIPVESKNLKHKEEEKELEWDEIEDLSSIHEKKAMGESGSPRKVDLLKRLSSAAEEEDLSWDIEDDDDDDEPAKA 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03736 404 Gene3D BSD domain 130 230 IPR035925 -
Trre13g03736 404 MobiDBLite consensus disorder prediction 1 47 - -
Trre13g03736 404 Coils Coil 174 194 - -
Trre13g03736 404 ProSiteProfiles BSD domain profile. 168 220 IPR005607 -
Trre13g03736 404 MobiDBLite consensus disorder prediction 240 270 - -
Trre13g03736 404 MobiDBLite consensus disorder prediction 386 404 - -
Trre13g03736 404 SMART wurzfinal6 168 220 IPR005607 -
Trre13g03736 404 MobiDBLite consensus disorder prediction 271 323 - -
Trre13g03736 404 Coils Coil 219 239 - -
Trre13g03736 404 MobiDBLite consensus disorder prediction 332 385 - -
Trre13g03736 404 SUPERFAMILY BSD domain-like 137 225 IPR035925 -
Trre13g03736 404 Pfam BSD domain 168 224 IPR005607 -
Trre13g03736 404 PANTHER SYNAPSE-ASSOCIATED PROTEIN 14 366 - -
Trre13g03736 404 MobiDBLite consensus disorder prediction 238 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03736 Trre-Chr13 45274964 45276178 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03736 - - mtr:25499068 452.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03736 13 45274964 45276178 Trre13g03736 13 45274964 45276178 ECH
Trre13g03736 13 45274964 45276178 Trre1g04656 1 52658509 52659915 PCT