Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04637 ATGGCGGCGAAAAACATGATTCTTCTTCTACTTTTCTTTTTCTTTCATGTAAACGCCATTTTAGACCCAACAGATTTTCTAGCTCTACAATCTATTCGGAAATCTCTTGAAGACATGCCTGGTTCTGATTTCTTTTCTTCTTGGGATTTCACTTCTGATCCATGCAATTTCTCCGGCGTTTTTTGTGATTCCGATAAGGTTATTTCTCTCAATCTCGGTGATCCTAGAGCCGGTTCAGCCGGTTTAACCGGTCGACTCGACCCGGCCATTGGTAAGCTTTCTTCTCTTACTGAGTTTACTATTGTTCCAGGAAGGATTTATGGTCCTCTGCCTCAAAATATCTCCAATTTGAAGAATCTCAGGTTTCTTGGTGTTAACAGAAACTTCATCTCCGGTGAGATTCCGGCGGAGTTAGGTGAGTTACGCAGTCTCAGAACCATTGATCTAAGTTATAATCAGCTCACCGGAAAAATTCCTCCAATGGTTGGATCATTACCGGGACTAACGAATCTCATTCTCTGTCATAACCGTTTATCCGGTTCTATTCCCCGGTTTGATTCTCAGAGTTTAAGCCGGTTGGACCTGAAACACAACTCTCTCACCGGTTCGATTGGTCCAAATTCTCTTCCTCCGTCGCTTCAGTATCTCTCATTGTCGTGGAATCAACTCACTGGTTCAATGGACCGGGTTTTAACCCGGCTTGAGCAGCTAAACTATTTGGACCTTAGTCTGAACCAGTTCACCGGAACCGTCCCGGGTCGGATATTCTCATTTCCACTGACGAATCTTCAGTTACAAAGAAATCAGTTCACCGGCTCAGTTGAACCGGTTGATCAAGTTGCAATCCCAACCGTTGATCTTAGTTTCAACAGATTATCGGGTCAAATTTCGCCTATGTTAGCTAGCGTGCAGAATCTTTACCTGAATAATAACCGGTTCACGGGTCGGGTACCCGCTAGTTTTGTGACGCGGTTACTTGATGCGAGTATACAGATATTGTATTTGCAGCATAATTATCTAACGGGAATTGAGATTAGTCCAACGGCTGTGATTCCAGAGAGAAGTTCACTGTGTATGCAGTATAATTGCATGGTCCCTCCCGTAGAGACTCCTTGCCCTTTGAGAGCTGGGAAGCAGAAAACAAGGCCTACTACACAGTGCAATCAGTACAACAAGGGATGA 1182 0.4416 MAAKNMILLLLFFFFHVNAILDPTDFLALQSIRKSLEDMPGSDFFSSWDFTSDPCNFSGVFCDSDKVISLNLGDPRAGSAGLTGRLDPAIGKLSSLTEFTIVPGRIYGPLPQNISNLKNLRFLGVNRNFISGEIPAELGELRSLRTIDLSYNQLTGKIPPMVGSLPGLTNLILCHNRLSGSIPRFDSQSLSRLDLKHNSLTGSIGPNSLPPSLQYLSLSWNQLTGSMDRVLTRLEQLNYLDLSLNQFTGTVPGRIFSFPLTNLQLQRNQFTGSVEPVDQVAIPTVDLSFNRLSGQISPMLASVQNLYLNNNRFTGRVPASFVTRLLDASIQILYLQHNYLTGIEISPTAVIPERSSLCMQYNCMVPPVETPCPLRAGKQKTRPTTQCNQYNKG 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04637 393 Gene3D Ribonuclease Inhibitor 187 364 IPR032675 -
Trre1g04637 393 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 8 389 - -
Trre1g04637 393 SUPERFAMILY L domain-like 36 364 - -
Trre1g04637 393 FunFam Nuclear pore complex protein NUP107 23 184 - -
Trre1g04637 393 Pfam Leucine Rich repeat 211 225 IPR001611 GO:0005515
Trre1g04637 393 Pfam Leucine rich repeat N-terminal domain 23 63 IPR013210 -
Trre1g04637 393 Pfam Leucine Rich Repeat 143 163 IPR001611 GO:0005515
Trre1g04637 393 Gene3D Ribonuclease Inhibitor 24 186 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04637 Trre-Chr1 52456947 52458128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04637 82 322 Receptor kinase-like Gene Family AT5G62230 31.727 7.25e-20 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04637 - - gmx:100794756 653.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g04637 1 52456947 52458128 Trre1g04637 1 52456947 52458128 ECH
Trre13g03713 13 44965109 44966287 Trre1g04637 1 52456947 52458128 PCT