Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04626 ATGACAGGTCTTGTTATGGTTACTAGAGGCGGTGGATGCGGCGGTGGAAGCAAAAGAACAAGAGCAACACGAGCAGCTGAAGAACAAGAAGAACAGCAGAACCAGCTTTCACTTGTAGCTTTACTTTTAGCAGCAATTAGAAAATCTATGGTAGCATGCAGATTAGATAGACCAGATGAAGTCATCTCAACCGTTCATCAAATGGAGATCGGATGGCCAACTGACGTTCAGCATATTACTCATGTTACTTTTGACCGTTTCAATGGATTTCTTGGTCTTCCTGTTGAGTTTGAGGTTGAGATCCCTGGTCGTGTTCCAAGTGCTAGTGTAAGTGTGTTTGGAGTTTCAGCAGAATCTATGCAGTGTTCTTATGATTCAAAAGGGAACAGTGTCCCAACTATTCTCATGCTAATGCAGGACCGTTTATATTCACAGGGAGGACTAAAGGCTGAAGGTATATTTCGCATAAACCCAGAAAATAGTAAAGAGGAGCATGTGAGGAACCAGTTGAATAGTGGTATTGTGCCTGATGACATTGATGTCCACTGCTTGGCGGGACTAATCAAAGCGTGGTTCCGAGAACTTCCTTCCGGAGTGCTAGATGGACTTTCGCCTGAACAAGTTCTTCAATGCAACACAGAAGAAGAATCTATTGATCTTGTGAAGCAGTTAAAGCCAACTGAATCTGCCTTACTCAGCTGGGCTATTGATCTCATGGCTGATGTTGTTCAAGAGGAGGAGTATAACAAAATGAATGCAAGAAACATTGCAATGGTTTTTGCTCCAAATATGACTCAGATGTCCGATCCTCTAACTGCTCTAATGCATGCGGTTCAAGTGATGAACTTGCTCAAGACATTGATAACGAAGACCCTTAGGGAACATGAAGAAACAGCAACAGGTGGATATTCACCTATGTCCTTTCGCACATCATTTCGCCGGTCAGAGGATGAATACGATAGTCAGCGAGAAACAGCAACGGGTGGATATTCACCCATGTCCTTTCGCTCATCATATCGCCCGTCTGAGGATGAATATGAAAGTCAACGAGAAATGGACGCAAGCGGTGAATTGAGACAGACCAAATCAGATTTTGACGATCACACTCATTACAGAAATAGCAGTGAAGAAGAATTGGAGGCTGAATCTTTGAGTGAGATAGAAGAATGCTTCTTAAAAAAATTGGATGAGCACACCAAAGAATTCTCAGAAGAACCTAAAGATTATTTGCAAGAAGAGTATGTGAGCTCGAAAAGTTGCTGTGACTATAGTGTGGAACCTGCTGAATCAATAACTGATATCAAAATCGTGAAATGCTGCTTGAGTTCCGACAACGAAAAGGTAAACTCTGACACAACGATTCCACTGCTAGGATGGATAGACACTGAAAATGTGGAGATGGTTGATAAGTTCACAGATCCTGTTTCGCCGGTGCTTGCATCTAGCTAA 1449 0.4251 MTGLVMVTRGGGCGGGSKRTRATRAAEEQEEQQNQLSLVALLLAAIRKSMVACRLDRPDEVISTVHQMEIGWPTDVQHITHVTFDRFNGFLGLPVEFEVEIPGRVPSASVSVFGVSAESMQCSYDSKGNSVPTILMLMQDRLYSQGGLKAEGIFRINPENSKEEHVRNQLNSGIVPDDIDVHCLAGLIKAWFRELPSGVLDGLSPEQVLQCNTEEESIDLVKQLKPTESALLSWAIDLMADVVQEEEYNKMNARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLITKTLREHEETATGGYSPMSFRTSFRRSEDEYDSQRETATGGYSPMSFRSSYRPSEDEYESQREMDASGELRQTKSDFDDHTHYRNSSEEELEAESLSEIEECFLKKLDEHTKEFSEEPKDYLQEEYVSSKSCCDYSVEPAESITDIKIVKCCLSSDNEKVNSDTTIPLLGWIDTENVEMVDKFTDPVSPVLASS 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04626 482 CDD RhoGAP 132 289 - -
Trre1g04626 482 SMART RhoGAP_3 129 292 IPR000198 GO:0007165
Trre1g04626 482 MobiDBLite consensus disorder prediction 340 379 - -
Trre1g04626 482 SMART PBD_5 70 104 IPR000095 -
Trre1g04626 482 MobiDBLite consensus disorder prediction 1 29 - -
Trre1g04626 482 MobiDBLite consensus disorder prediction 324 338 - -
Trre1g04626 482 ProSiteProfiles Rho GTPase-activating proteins domain profile. 115 295 IPR000198 GO:0007165
Trre1g04626 482 FunFam Rho GTPase-activating protein 5 100 293 - -
Trre1g04626 482 Gene3D CRIB domain 65 101 IPR036936 -
Trre1g04626 482 CDD CRIB 68 108 - -
Trre1g04626 482 Gene3D Rho GTPase activation protein 102 298 IPR008936 -
Trre1g04626 482 Pfam RhoGAP domain 132 266 IPR000198 GO:0007165
Trre1g04626 482 Pfam P21-Rho-binding domain 69 98 IPR000095 -
Trre1g04626 482 SUPERFAMILY GTPase activation domain, GAP 111 289 IPR008936 -
Trre1g04626 482 MobiDBLite consensus disorder prediction 296 381 - -
Trre1g04626 482 PANTHER MKIAA1688 PROTEIN 20 373 IPR044785 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04626 Trre-Chr1 52298024 52300474 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04626 - - tpra:123918915 858.211
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g04626 1 52298024 52300474 Trre1g04626 1 52298024 52300474 ECH
Trre13g04657 13 53777873 53780564 Trre1g04626 1 52298024 52300474 PCT