LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre13g04657	ATGAGAGGACCAGTTATGGTAACAAAGAGTGGTGGATGTGGTGGTGGTGGTAGTGGTTTGAAGGGAAGAAGAGGAAACAACAACGGCGGCGGCGAAGAAGTGTCGCCGGCTGCTTTAATGTTGGCTGCTTTAAAGAAATCAATGGTGGCTTGTAGTGTGGAGAGTCCTGACGATGTAATCTCAACCGTTCATCATCCAATGGAGATTGGTTGGCCTACAAACGTTAAACATGTTAGTCATGTTACTTTTGATAGGTTTAATGGATTTTTGGGTCTTCCTCTTGAGTTAGAGGTTCATGTTCCTGTTCCTGTTCCCAGTGCTAGTGTTAGTGTGTTTGGTGTCTCAGCAGAATCAATGCAATGTTCTTATGATTCAAAAGGAAACAGTGTCCCCACAATTCTGCTACTAATGCAAGAGAGATTATACTCACAAGGAGGACTAAAGGCTGAAGGAATATTTCGTATAAATCCCGAAAACGGTGAAGAGGAACATTTGAGGGAGCAATTGAATAGTGGCATTGTACCAAATGACATTGATGTACATTGTTTGGCTGGTTTAATAAAAGCATGGTTTAGGGAACTACCTTCAGGAGTGTTGGATGGACTTTCACCTGAACAAGTTCTTGAATGCAACACAGAAGAAGAATCTGTTGATCTTGTGAAGCAGCTGAATCCAGTTGAATCAGCTTTGCTTAATTGGGCTATTGAACTTATGGCTGATGTTGTAGTTGAAGAAGAGTATAATAAAATGGATGCTAGAAATATTGCTATGGTTTTTGCTCCAAATATGACTCTGATGTCTGATCCACTAACTGCTCTAATGCACGCGGTCCAAGTGATGAATTTACTGAAGACACTGATATTGAAGACACTTCGAGATCGCGAAGAATCATTAACATCAGAATACTCATCCATGTCATCTCATTCATCAGATCACCAATCAGAAAATGAGGACTATGATAGCCAACAAGAAATGGATACTAGTGGTGAAATGAAAAGGGCCAAGATAGATTATGATGATCATGTTAACTACAACCACAACATCGAAGAATTTGTTGCATCTGTAAGTGAAATAGAGGAATGTTTCTTAGAACAATTGGACGATGTTAAGACAAAACGATTCACCGAAGAAAAACCTGCAGAATATTTGCAACAAGAGTTAGAGAGCCCTACCAAAACTGAAGATTCCTGTCTAAGTTCCAGTTATAGAGACGGCTCGACGACAACTCTAACAGCCGAGGGATCCAATGCTGACACAACAAGTAGTCCATCAGTAGAAAGTAAAGAAACCAACGACGTAGAGATGGTAGATAAATTTACCGATTCGGTTTCACTTTTGCCTTTGTTTACATCTAGTTAA	1359	0.401	MRGPVMVTKSGGCGGGGSGLKGRRGNNNGGGEEVSPAALMLAALKKSMVACSVESPDDVISTVHHPMEIGWPTNVKHVSHVTFDRFNGFLGLPLELEVHVPVPVPSASVSVFGVSAESMQCSYDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENGEEEHLREQLNSGIVPNDIDVHCLAGLIKAWFRELPSGVLDGLSPEQVLECNTEEESVDLVKQLNPVESALLNWAIELMADVVVEEEYNKMDARNIAMVFAPNMTLMSDPLTALMHAVQVMNLLKTLILKTLRDREESLTSEYSSMSSHSSDHQSENEDYDSQQEMDTSGEMKRAKIDYDDHVNYNHNIEEFVASVSEIEECFLEQLDDVKTKRFTEEKPAEYLQQELESPTKTEDSCLSSSYRDGSTTTLTAEGSNADTTSSPSVESKETNDVEMVDKFTDSVSLLPLFTSS	452

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre13g04657	452	ProSiteProfiles	CRIB domain profile.	69	82	IPR000095	-
	Trre13g04657	452	ProSiteProfiles	Rho GTPase-activating proteins domain profile.	114	299	IPR000198	GO:0007165
	Trre13g04657	452	SMART	RhoGAP_3	128	291	IPR000198	GO:0007165
	Trre13g04657	452	Pfam	P21-Rho-binding domain	68	96	IPR000095	-
	Trre13g04657	452	Gene3D	Rho GTPase activation protein	101	328	IPR008936	-
	Trre13g04657	452	PANTHER	MKIAA1688 PROTEIN	31	384	IPR044785	GO:0005096
	Trre13g04657	452	MobiDBLite	consensus disorder prediction	386	429	-	-
	Trre13g04657	452	SUPERFAMILY	GTPase activation domain, GAP	110	288	IPR008936	-
	Trre13g04657	452	MobiDBLite	consensus disorder prediction	1	32	-	-
	Trre13g04657	452	Gene3D	CRIB domain	64	100	IPR036936	-
	Trre13g04657	452	CDD	CRIB	67	97	-	-
	Trre13g04657	452	MobiDBLite	consensus disorder prediction	311	329	-	-
	Trre13g04657	452	MobiDBLite	consensus disorder prediction	385	433	-	-
	Trre13g04657	452	CDD	RhoGAP	131	281	-	-
	Trre13g04657	452	MobiDBLite	consensus disorder prediction	298	329	-	-
	Trre13g04657	452	FunFam	Rho GTPase-activating protein 5	99	292	-	-
	Trre13g04657	452	Pfam	RhoGAP domain	131	264	IPR000198	GO:0007165
	Trre13g04657	452	SMART	PBD_5	69	103	IPR000095	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre13g04657	Trre-Chr13	53777873	53780564	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre13g04657	-		K20642	gmx:100812700	614.379

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Trre13g04657	13	53777873	53780564	Trre13g04657	13	53777873	53780564	ECH
	Trre13g04657	13	53777873	53780564	Trre1g04626	1	52298024	52300474	PCT