Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04450 ATGAACTACAACCGTTTGATTTCCGGCGGAGGAAGGCTTCTCCGTCGACTATGCACGGAGGCGACGGTGGCTGAGATTCCGAAGAGAAAACCAGGTCTTTACCAAAAACTAGCGGAGCTAGAAAAGACCGGTGGAACCGTGTCGCAGACGTTGAATCAGTATATAATGGAAGGCAAAGCCGTCGGAAAAGGAGAACTCGAGATATGCGTCGAGGAGCTTCGAAAGTATCGTAGATTCAATCACGCATTCGAGATACTGGAATGGATGATGATGAGGAAAATCAATTTTTCATGGGATAACTATGCAACGTATTTAGATCTTATGTCAAAAGTGAAAGGTGTGATTGATGCTGAAAATTACTTCAATAGTCTTCCAAATCCTGCTAAGAACAAGTACACATACGGTTCTCTGTTAAATTGTTACTGCAAAGAATTGATGCTAGATAAAGCATTGTCTCATTTTGAGAAGATGGATGAATTAGGGTTTGTTACTAGTTTATCTTTCACCAATTTGATGACATTGTATATGAGGTTAGGTCAACCTCTGAAAGTTCGTCAGCTGGTTAATGATATGAAGGTGAGGAAATTTCGTATGACTGGATTTACGTACATTGTTTGGATGAATAGCTGCGCTGCTTTGAATGATCTTGATGGGGTTGAAAGTGTTTATGAGGAGATGAAAAGAGAAAATGAAGAGAAAATTGATTGGAAGACTTATAGTAACCTTGCTGCTATTTATATAAAAGCTGGAGAATTTGTGAAAGCTGAGTTGATGCTTAAGAAGATGGAAAAAGTAATGAAGCCGCGGCAACGTGAAACTTATCATTGCTTGCTGAGTCTTTATGGCGGGACTGGTAATGTTACAGAGGTTTATAGAGTGTGGAGTATGCTCACGAAAGTCTCCCCGGTGACTAATCGGAGCTATCTTATTATGCTTTCTACCCTACGAAGGCTTAATGATATGGAGGGTTTAATAAAATTGTTTAAGGAGTGGGAATCTAGGCATGTTAATTATGATGGTAGGGTGGTTGGTGTTGCAGTGGATGCTTACTTGAGTCAAAACATGAATGAAGAAGCTGCGTCGATCTTTGAGGAGGCTCTCAAGAGGTGCAAAGGACCTTACTTTAGGATTCGGGAAATGTTCATGGTGTCATTATTGGAGAAAGGACAATTGGATGGTGCTATGAGCCACTTAGAGGCCGCGCTTTCAGAAGTCACCGGTACCGGTAATAAATATCGCCCTTCACCACAAGTCGTGAGTGCTTTTCTAAAGTATTATGAAAAAGAAACAGATCTTGATGGTGTTGATGAGTTTAGTAAGATTCTCAGGAATCACAATTTTGATGAATCATGTATTAAAACTTGCATTACTGCATCCGAATCATCTTCTGGTATTCATCTGGTATTGAAGGAAGATTCTTATGTCGACCATGTGCACCAGAACTTGTAA 1449 0.4023 MNYNRLISGGGRLLRRLCTEATVAEIPKRKPGLYQKLAELEKTGGTVSQTLNQYIMEGKAVGKGELEICVEELRKYRRFNHAFEILEWMMMRKINFSWDNYATYLDLMSKVKGVIDAENYFNSLPNPAKNKYTYGSLLNCYCKELMLDKALSHFEKMDELGFVTSLSFTNLMTLYMRLGQPLKVRQLVNDMKVRKFRMTGFTYIVWMNSCAALNDLDGVESVYEEMKRENEEKIDWKTYSNLAAIYIKAGEFVKAELMLKKMEKVMKPRQRETYHCLLSLYGGTGNVTEVYRVWSMLTKVSPVTNRSYLIMLSTLRRLNDMEGLIKLFKEWESRHVNYDGRVVGVAVDAYLSQNMNEEAASIFEEALKRCKGPYFRIREMFMVSLLEKGQLDGAMSHLEAALSEVTGTGNKYRPSPQVVSAFLKYYEKETDLDGVDEFSKILRNHNFDESCIKTCITASESSSGIHLVLKEDSYVDHVHQNL 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04450 482 Gene3D Tetratricopeptide repeat domain 232 302 IPR011990 GO:0005515
Trre1g04450 482 Gene3D Tetratricopeptide repeat domain 303 473 IPR011990 GO:0005515
Trre1g04450 482 Gene3D Tetratricopeptide repeat domain 64 231 IPR011990 GO:0005515
Trre1g04450 482 FunFam Pentatricopeptide repeat-containing protein mitochondrial 63 272 - -
Trre1g04450 482 Pfam PPR repeat 238 264 IPR002885 -
Trre1g04450 482 Pfam PPR repeat 167 195 IPR002885 -
Trre1g04450 482 Pfam PPR repeat 201 230 IPR002885 -
Trre1g04450 482 Pfam PPR repeat 132 162 IPR002885 -
Trre1g04450 482 NCBIfam pentatricopeptide repeat 132 163 IPR002885 -
Trre1g04450 482 NCBIfam pentatricopeptide repeat 201 230 IPR002885 -
Trre1g04450 482 PANTHER OS12G0527900 PROTEIN 26 454 - -
Trre1g04450 482 SUPERFAMILY TPR-like 119 404 IPR011990 GO:0005515
Trre1g04450 482 SUPERFAMILY TPR-like 202 305 IPR011990 GO:0005515
Trre1g04450 482 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 130 164 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04450 Trre-Chr1 50408498 50410042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04450 28 444 EF-hand Containing Proteins AT1G02150 34.977 2.00e-76 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04450 - - gmx:100781679 625.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g04450 1 50408498 50410042 Trre1g04450 1 50408498 50410042 ECH
Trre1g04450 1 50408498 50410042 Trre13g04507 13 52593474 52594487 PCT