Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04393 ATGTGTATTACACAAACGGAAACCCAGCGTTCTGTAAATCCGCGAAGGTCTGACGGTGAGAGAAGCTCCTTTTATTTTCTTTTCTCTTTGTTACAAGGAGAAGAGATCCATCCATCCATCCGCGCCTTCAATCTTCTTCTTCTTCTTCTTCTCCAAGAAAACTTGAAAATGGGATTGTCTTTCACCAAGCTGTTCAGTCGGCTATTTGCCAAGAAAGAGATGCGTATACTTATGGTAGGTCTCGATGCGGCTGGTAAGACCACAATTCTTTATAAGCTTAAGCTTGGAGAGATTGTCACCACCATTCCTACCATCGGGTTCAATGTGGAAACTGTGGAATATAAGAACATCAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAGATCCGTCCTCTGTGGAGACATTACTTCCAAAATACACAAGGACTTATTTTTGTGGTTGATAGCAATGACAGGGATCGTGTTGTTGAAGCTAGAGATGAGCTGCATAGGATGTTGAATGAGGATGAATTGAGAGATGCCGTGCTTCTAGTTTTTGCAAACAAGCAAGATCTTCCAAATGCTATGAATGCTGCTGAGATAACTGATAAGCTTGGTCTTCATTCTCTCCGTCAGCGTCACTGGTACATCCAGAGCACATGTGCCACATCTGGTGAAGGACTTTATGAAGGACTTGACTGGCTCTCAAACAATATTGCAAACAAGGCATAG 714 0.4314 MCITQTETQRSVNPRRSDGERSSFYFLFSLLQGEEIHPSIRAFNLLLLLLLQENLKMGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04393 237 FunFam ADP-ribosylation factor 1 57 237 - -
Trre1g04393 237 PANTHER ADP RIBOSYLATION FACTOR-RELATED 63 232 IPR024156 GO:0005525
Trre1g04393 237 NCBIfam small GTP-binding protein domain 72 212 IPR005225 GO:0005525
Trre1g04393 237 ProSiteProfiles small GTPase Arf family profile. 67 233 - -
Trre1g04393 237 Gene3D - 60 237 IPR027417 -
Trre1g04393 237 Pfam ADP-ribosylation factor family 61 233 IPR006689 GO:0003924|GO:0005525
Trre1g04393 237 SMART arf_sub_2 57 237 - -
Trre1g04393 237 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 70 235 IPR027417 -
Trre1g04393 237 SMART rab_sub_5 74 236 - -
Trre1g04393 237 PRINTS GTP-binding SAR1 protein signature 75 98 IPR006689 GO:0003924|GO:0005525
Trre1g04393 237 PRINTS GTP-binding SAR1 protein signature 103 127 IPR006689 GO:0003924|GO:0005525
Trre1g04393 237 PRINTS GTP-binding SAR1 protein signature 130 155 IPR006689 GO:0003924|GO:0005525
Trre1g04393 237 PRINTS GTP-binding SAR1 protein signature 175 196 IPR006689 GO:0003924|GO:0005525
Trre1g04393 237 CDD Arf1_5_like 74 232 IPR045872 GO:0003924
Trre1g04393 237 SMART sar_sub_1 57 233 IPR006689 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04393 Trre-Chr1 49844364 49846657 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04393 K07937 - rvl:131305415 369.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g04393 1 49844364 49846657 Trre1g04393 1 49844364 49846657 ECH
Trre13g04858 13 55073160 55075313 Trre1g04393 1 49844364 49846657 PCT