Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04858 ATGCGTATACTTATGGTCGGTCTCGATGCCGCTGGTAAGACCACCATTCTGTATAAGCTCAAGCTTGGAGAAATTGTCACCACCATTCCCACCATTGGGTTTAATGTGGAAACTGTGGAGTATAAGAACATCAGCTTTACTGTGTGGGATGTTGGAGGCCAGGACAAGATTCGTCCTCTATGGAGACACTACTTCCAAAACACACAAGGGCTTATTTTTGTGGTTGATAGCAATGATCGAGACCGTGTTGTTGAAGCTAGGGATGAGCTGCACAGGATGTTAAATGAGGATGAGCTGAGAGATGCCGTGCTTCTAGTTTTTGCAAACAAGCAAGATCTTCCAAATGCTATGAATGCTGCTGAAATAACTGACAAGCTTGGTCTTCATTCACTTCGTCAGCGTCACTGGTATATCCAGAGCACATGCGCCACTTCTGGTGAAGGACTTTATGAAGGACTTGACTGGCTGTCAAACAACATTGCAAACAAGGCTTAG 495 0.4485 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04858 164 FunFam ADP-ribosylation factor 1 1 164 - -
Trre13g04858 164 PANTHER ADP RIBOSYLATION FACTOR-RELATED 1 159 IPR024156 GO:0005525
Trre13g04858 164 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 162 IPR027417 -
Trre13g04858 164 Gene3D - 1 164 IPR027417 -
Trre13g04858 164 ProSiteProfiles small GTPase Arf family profile. 1 160 - -
Trre13g04858 164 NCBIfam small GTP-binding protein domain 1 140 IPR005225 GO:0005525
Trre13g04858 164 CDD Arf1_5_like 1 159 IPR045872 GO:0003924
Trre13g04858 164 SMART rab_sub_5 1 163 - -
Trre13g04858 164 Pfam ADP-ribosylation factor family 1 160 IPR006689 GO:0003924|GO:0005525
Trre13g04858 164 PRINTS GTP-binding SAR1 protein signature 30 54 IPR006689 GO:0003924|GO:0005525
Trre13g04858 164 PRINTS GTP-binding SAR1 protein signature 57 82 IPR006689 GO:0003924|GO:0005525
Trre13g04858 164 PRINTS GTP-binding SAR1 protein signature 2 25 IPR006689 GO:0003924|GO:0005525
Trre13g04858 164 PRINTS GTP-binding SAR1 protein signature 102 123 IPR006689 GO:0003924|GO:0005525
Trre13g04858 164 SMART arf_sub_2 1 164 - -
Trre13g04858 164 SMART sar_sub_1 1 160 IPR006689 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04858 Trre-Chr13 55073160 55075313 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04858 K07937 - pvy:116138590 334.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04858 13 55073160 55075313 Trre13g04858 13 55073160 55075313 ECH
Trre13g04858 13 55073160 55075313 Trre1g04393 1 49844364 49846657 PCT