Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04302 ATGGGGAACAAGTATCTGTTGGTAGCTTGCTGTTTGTGGGCTTTGACATGCTCGCTTCTACCTTCTTTCTCCTATGGACTTATGCGGATTGATTTGAAGAAGAGAACTCTAGATCTTGAAAGTATTCAAGCTGCTAGAATGGTCAGAGAGAAGCTAAAGTCAAGCAGACCCGTGTTGGGTGCAAATGACCAGTATACCGATAAATCAACTGATGATGCCATAGTTCCTTTGAAGAATTATTTGGATGCACAATATTACGGAGAGATTGGAATTGGCACACCTCCACAGACCTTTAATGTCATATTTGATACTGGCAGTTCCAACCTCTGGGTTCCATCGTCGAAATGCTATTTTTCTCTTGCCTGCTACACTCATCATTGGTACAAGGCAAAAAAATCCAAAACATATACCAAAAATGGAACATCATGTAAAATAGCATATGGATCTGGAGCAATATCTGGTTTTTTCAGTCAAGATAATGTTAAACTTGGTGATGTTGTTGTCAAGGATGTGGATTTCATTGAGGCTACTCGTGAAGGAAGTATTTCCTTTGTGCTGGCAAAGTTTGATGGATTACTTGGGCTTGGGTTTCAGGAGATCTCTGTTGAAAATGCTGTGCCGGTGTGGTACAAAATGGTGCAGCAAGATCTAGTAAATGAGCAGGTGTTCTCTTTTTGGCTCAATGGGGATCCAAAGGCGAAAAAAGGTGGCGAGCTAGTTCTCGGGGGTGTTGATCCGAATCACTTCAAAGGAAAACATATATATGTTCCAGTCACTCAAAAAGGCTATTGGCAGTTTGAAATGGGAGATTTTTTCATTGGAGGTCTTTCAACAGGTGTTTGCGAAAGTGGCTGTGCTGCAATTGTGGATTCAGGAACATCATTGCTTGCTGGTCCAACTACTGTTGTGACCGAAATCAACCATGCTATTGGAGCTGAAGGAGTTCTGAGTGTAGAATGTAAGGAAATTGTTACTGAATATGGAGAACTGATATGGGATCTCTTGGTAGCCGGGGTAAGACCTGGTGATGTATGTTCACAAGTTGGTTTATGTGTTTCCAAGAGGGATCAATCTAAGAGCATGGGGATTGAGATGGTTACTGAAAAGGAACAGGGAGAGTTATCTGCTAAAGATACTGCTTTGTGTTCTTCCTGTCAGATGCTTGTGATTTGGATCCAGAATCAACTAAAGCGAAAGTCAACTAAGGATAGAATATTCAACTACGTAAATCAACTATGTGAGAGCTTGCCAAGTCCTAATGGAGAGTCCGTAGTAGACTGTAATAGCATTTATCAATTGCCAAATATTTCGTTTACCATCGGAGATAAATCTTTCGTCCTCAGTCCAGAGCAGTATATTTTGAAAACTGGAGAAGGCATTGCACAAGTCTGCCTCAGTGGGTTTATTGCTTTTGACATTCCTCCTCCACGGGGTCCTCTCTGGATTCTTGGCGATATTTTCATGAGGGTATATCACACTGTCTTTGACTATGGAAATCTCCAACTTGGTTTTGCTGAAGCTGTTTAG 1527 0.4139 MGNKYLLVACCLWALTCSLLPSFSYGLMRIDLKKRTLDLESIQAARMVREKLKSSRPVLGANDQYTDKSTDDAIVPLKNYLDAQYYGEIGIGTPPQTFNVIFDTGSSNLWVPSSKCYFSLACYTHHWYKAKKSKTYTKNGTSCKIAYGSGAISGFFSQDNVKLGDVVVKDVDFIEATREGSISFVLAKFDGLLGLGFQEISVENAVPVWYKMVQQDLVNEQVFSFWLNGDPKAKKGGELVLGGVDPNHFKGKHIYVPVTQKGYWQFEMGDFFIGGLSTGVCESGCAAIVDSGTSLLAGPTTVVTEINHAIGAEGVLSVECKEIVTEYGELIWDLLVAGVRPGDVCSQVGLCVSKRDQSKSMGIEMVTEKEQGELSAKDTALCSSCQMLVIWIQNQLKRKSTKDRIFNYVNQLCESLPSPNGESVVDCNSIYQLPNISFTIGDKSFVLSPEQYILKTGEGIAQVCLSGFIAFDIPPPRGPLWILGDIFMRVYHTVFDYGNLQLGFAEAV 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04302 508 SUPERFAMILY Saposin 316 417 IPR011001 -
Trre1g04302 508 SUPERFAMILY Acid proteases 15 507 IPR021109 -
Trre1g04302 508 ProSiteProfiles Saposin B type domain profile. 315 355 IPR008139 -
Trre1g04302 508 FunFam Lysosomal aspartic protease 71 313 - -
Trre1g04302 508 Gene3D - 315 417 - -
Trre1g04302 508 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 18 506 IPR001461 GO:0004190|GO:0006508
Trre1g04302 508 CDD phytepsin 75 506 IPR033869 GO:0004190
Trre1g04302 508 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 287 298 IPR001969 GO:0004190|GO:0006508
Trre1g04302 508 Gene3D Acid Proteases 28 243 IPR021109 -
Trre1g04302 508 Gene3D Acid Proteases 244 507 IPR021109 -
Trre1g04302 508 SMART sapb_4 279 351 IPR008139 -
Trre1g04302 508 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 100 111 IPR001969 GO:0004190|GO:0006508
Trre1g04302 508 ProSiteProfiles Peptidase family A1 domain profile. 85 505 IPR033121 -
Trre1g04302 508 FunFam Lysosomal aspartic protease 361 507 - -
Trre1g04302 508 ProSiteProfiles Saposin B type domain profile. 378 419 IPR008139 -
Trre1g04302 508 Pfam Saposin-like type B, region 1 381 417 IPR007856 GO:0006629
Trre1g04302 508 PRINTS Pepsin (A1) aspartic protease family signature 237 250 IPR001461 GO:0004190|GO:0006508
Trre1g04302 508 PRINTS Pepsin (A1) aspartic protease family signature 287 298 IPR001461 GO:0004190|GO:0006508
Trre1g04302 508 PRINTS Pepsin (A1) aspartic protease family signature 481 496 IPR001461 GO:0004190|GO:0006508
Trre1g04302 508 PRINTS Pepsin (A1) aspartic protease family signature 91 111 IPR001461 GO:0004190|GO:0006508
Trre1g04302 508 Pfam Eukaryotic aspartyl protease 84 507 IPR033121 -
Trre1g04302 508 Pfam Saposin-like type B, region 2 319 351 IPR008138 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04302 Trre-Chr1 48671681 48675290 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04302 K08245 - gmx:547993 897.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g04302 1 48671681 48675290 Trre1g04302 1 48671681 48675290 ECH
Trre13g04969 13 55829405 55832276 Trre1g04302 1 48671681 48675290 PCT