Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04969 ATGATGAGAATCGGTTTGCAGAAGAGACCTCTGGATCTTCATAGTATTAATGCTTTTAAAAAGGCAAGAGAACAACAACTAAGATCAGGAAGACCAATGATGGGTGCACATAATGGTGATGCTATAGTACCTTTGAAGGATTATATGAATGCTCAATATTTTGGGGAGATTGGAATTGGCACGCCTCCACAAACCTTTACTGTCATATTTGACACCGGCAGTTCCAACCTTTGGGTTCCATCATCCAAGTGTTACTTTTCTCTTGCCTGCTATACCCATAATTGGTACAAGGCAAAGAAATCACATACGTATAACAAAAACGGAACATCTTGTAAAATAAGCTATGGAACCGGATCAATATCTGGTTTCTTCAGTCAAGATAATGTTAAAGTTGGCAGTTCTGTGGTCAAGCATCAGGATTTCATCGAGGCTACCCGAGAAGGAAGTCTTGCTTTTCTCGCAGGAAAGTTTGATGGAATATTTGGACTTGGATTTCAAGAGATCTCAGTTGCAAGAGCTTTGCCAGTATGGTACAATATGGTGGAACAAAATCTTATCGGTGAGAAGGTCTTCTCCTTTTGGCTTAATGGGAATCCTAATGCCAAAAAGGGCGGCGAATTAGTTTTTGGTGGTGTTGACCCTAAGCATTTCAAAGGAAAACACACCTATGTTCCGGTTACTGAAAAAGGTTACTGGCAGATTGAAATGGGAGATTTTTTCATTGGAGGCTCGTCAACAGGTGTTTGTGAAGGTGGTTGTGCTGCTATTGTGGACTCAGGAACATCTTTGCTTGCTGGTCCAACTGCTGTTGTAACTGAAATCAACCATGCTATTGGAGCTGAAGGAGTTCTAAGTGTAGAATGTAAAGAAGTTGTTTCTCAATATGGAGAGTTGATATGGGATCTCCTAGTATCAGGGGTAAAACCTGGTGATGTATGTTCACAAGTTGGTTTATGTTCTATGCGCCGGGATCAATCTAAGAGTGCTGTGATTGAGATGGTGACTGAAAAAGAACAGGGTGAGTTGTCAGCTAGAGATACTCCTTTGTGTTCGTCTTGTCAGATGCTTGTTCTTTGGATTCAGAATCAACTAAAACAAAAGGCGAACAAGGAAAGAGTATTCAACTATGTGAATCAACTGTGCGAGAGTATTCCAAGTCCATCCGGAGAATCAGTGATAAGCTGTAACGATATAAATAAGTTGCCAAACATTTCATTCACTATTGGAGACAAACCCTTCGTTCTCACACCAGAACAGTATATTCTAAGAACCGGAGAAGGCATTACAGAGGCCTGCCTTAGTGGGTTTATTGCTTTTGATATTCCTCCTCCAAAGGGTCCACTCTGGATTCTTGGTGATGTTTTCATGAGAGCATATCATACCGTCTTCGACTACGGAAACCTCCAAGTTGGTTTTGCTGAAGCTGCCTAG 1431 0.4123 MMRIGLQKRPLDLHSINAFKKAREQQLRSGRPMMGAHNGDAIVPLKDYMNAQYFGEIGIGTPPQTFTVIFDTGSSNLWVPSSKCYFSLACYTHNWYKAKKSHTYNKNGTSCKISYGTGSISGFFSQDNVKVGSSVVKHQDFIEATREGSLAFLAGKFDGIFGLGFQEISVARALPVWYNMVEQNLIGEKVFSFWLNGNPNAKKGGELVFGGVDPKHFKGKHTYVPVTEKGYWQIEMGDFFIGGSSTGVCEGGCAAIVDSGTSLLAGPTAVVTEINHAIGAEGVLSVECKEVVSQYGELIWDLLVSGVKPGDVCSQVGLCSMRRDQSKSAVIEMVTEKEQGELSARDTPLCSSCQMLVLWIQNQLKQKANKERVFNYVNQLCESIPSPSGESVISCNDINKLPNISFTIGDKPFVLTPEQYILRTGEGITEACLSGFIAFDIPPPKGPLWILGDVFMRAYHTVFDYGNLQVGFAEAA 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04969 476 Gene3D Acid Proteases 212 476 IPR021109 -
Trre13g04969 476 FunFam Lysosomal aspartic protease 39 281 - -
Trre13g04969 476 Pfam Eukaryotic aspartyl protease 52 475 IPR033121 -
Trre13g04969 476 Gene3D Acid Proteases 2 211 IPR021109 -
Trre13g04969 476 Pfam Saposin-like type B, region 2 287 319 IPR008138 -
Trre13g04969 476 PRINTS Pepsin (A1) aspartic protease family signature 205 218 IPR001461 GO:0004190|GO:0006508
Trre13g04969 476 PRINTS Pepsin (A1) aspartic protease family signature 59 79 IPR001461 GO:0004190|GO:0006508
Trre13g04969 476 PRINTS Pepsin (A1) aspartic protease family signature 449 464 IPR001461 GO:0004190|GO:0006508
Trre13g04969 476 PRINTS Pepsin (A1) aspartic protease family signature 255 266 IPR001461 GO:0004190|GO:0006508
Trre13g04969 476 ProSiteProfiles Saposin B type domain profile. 283 323 IPR008139 -
Trre13g04969 476 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 255 266 IPR001969 GO:0004190|GO:0006508
Trre13g04969 476 ProSiteProfiles Peptidase family A1 domain profile. 53 473 IPR033121 -
Trre13g04969 476 CDD phytepsin 43 474 IPR033869 GO:0004190
Trre13g04969 476 SUPERFAMILY Acid proteases 39 475 IPR021109 -
Trre13g04969 476 Pfam Saposin-like type B, region 1 348 385 IPR007856 GO:0006629
Trre13g04969 476 Gene3D - 283 385 - -
Trre13g04969 476 ProSiteProfiles Saposin B type domain profile. 346 387 IPR008139 -
Trre13g04969 476 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 68 79 IPR001969 GO:0004190|GO:0006508
Trre13g04969 476 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 25 474 IPR001461 GO:0004190|GO:0006508
Trre13g04969 476 SUPERFAMILY Saposin 284 385 IPR011001 -
Trre13g04969 476 FunFam Lysosomal aspartic protease 341 475 - -
Trre13g04969 476 SMART sapb_4 247 319 IPR008139 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04969 Trre-Chr13 55829405 55832276 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04969 K08245 - gmx:548009 853.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04969 13 55829405 55832276 Trre13g04969 13 55829405 55832276 ECH
Trre13g04969 13 55829405 55832276 Trre1g04302 1 48671681 48675290 PCT