Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04300 ATGGCCTTCCATGATCAAAATCACAAAAACGGCGACCTTTCAAAGAAACCAAAGCTCTATATCTCTCCGATCACCGAAGCCGAGATTCAATCAGAATTCTCCCACCACGACCCCAACATAGCACGCCTCAACAACGGAGCCTTTGGTTGCTGTCCATCCTCCGTCCTTGCAGCTCAACGTCAATGGCAGCTCAAATTCCTCCGTCAACCTGATCACTTCTACTTCAACCACCTCAAAAACGGAATCCTCCATTCCCGAACCATCATCAAAGAACTCGTCAACGCTCAACACCTCGACGAAATCTCCATTGTGGATAACGCCTCCACTGCCACTGCTATCGTTCTTCAGCAAGCAACGTGGGCTTTCCATGAAGGAAAGTTCAATAAAGGAGACGCTGTCGTCATGCTTCACTATGCTTACGGCTCCGTCAAGAAAGCTATCGAAGCGTATGTGACGCGTGCTGGTGGTAGAGTCATCGAGGTTCCACTTGCTTTTCCCGTAACCTCCGAAGACGACATTGTAAGAGAGTTCCGTCAAGCATTGGAAAAAGCAAAGAGCGAAGGTAGTAGTAATAGTAATAATAAAGTTAGATTGGCAGTTATTGATCATGTGACTTCTATGCCGAGCATGGTGATTCCGGTGAAAGAGTTAGTTAAGATTTGTAGAGAGGAAGGTGTTGAGCAGGTTTTCGTCGATGCAGCTCACGCGATTGGGTGCACAACGCGCGTTGATATGCAAGAGATTGGAGCTGATTTTTACGCAAGCAATTTGCATAAGTGGTTTTTTTGTCCACCTTCGGTGGCATTTATCTACGCACGGAAATCAGTTAATTCAGTTGATTTACATCACCCTGTCGTGTCACACGAGTACGGGAATGGATTAGCTATTGAAAGTTCATGGATTGGAAATAGAGATTATAGTGCTCAGTTAGTTGTTCCTGCTGTTATGGAATTTGTAAATAGGTTTGAAGGTGGAATTGAAGGAATTAAAAAGAGGAACCATGATTGTGTTGTTGAGATGGGTGAGATGTTGGTGGAAGCTTGGGGGACACATCTTGGAACACCTCATCATATGAGTGCAAGTATGGTTATGGTTGGTTTACCTCCTTCTTTGAGGATTATGAATGATTGGGATGCTATTAATCTTAGGACACATTTGAGGGAGTTTTTTGGGGTTGAAGTACCTATTTATTTTAGAGAGGGAGGTGAAGTTGGATGTGTAAGTGGATATGCTAGAATTTCTCATCAAGTGTATAATAAAGTTGATGATTATTACAAGTTTAGGGATGCAATTAACAAACTTAATCGATACTTGTGTTTTTTTTCCTCTTTCTGGAAAACTAAAATCGAAATCACTCTCGCTCTCTGCGAACCACCGCTACCATGGCCATGGCCACCGGCACCGCCGTTTTATCCTCTCGTCTCCATAAAGATTCTTCTCCATCGAGCTTTCTCTGCGAGTTTCTCCGTCGTTAACTGGTTGTTCATTTTCACTCGTTTTGATTCGTGA 1509 0.4354 MAFHDQNHKNGDLSKKPKLYISPITEAEIQSEFSHHDPNIARLNNGAFGCCPSSVLAAQRQWQLKFLRQPDHFYFNHLKNGILHSRTIIKELVNAQHLDEISIVDNASTATAIVLQQATWAFHEGKFNKGDAVVMLHYAYGSVKKAIEAYVTRAGGRVIEVPLAFPVTSEDDIVREFRQALEKAKSEGSSNSNNKVRLAVIDHVTSMPSMVIPVKELVKICREEGVEQVFVDAAHAIGCTTRVDMQEIGADFYASNLHKWFFCPPSVAFIYARKSVNSVDLHHPVVSHEYGNGLAIESSWIGNRDYSAQLVVPAVMEFVNRFEGGIEGIKKRNHDCVVEMGEMLVEAWGTHLGTPHHMSASMVMVGLPPSLRIMNDWDAINLRTHLREFFGVEVPIYFREGGEVGCVSGYARISHQVYNKVDDYYKFRDAINKLNRYLCFFSSFWKTKIEITLALCEPPLPWPWPPAPPFYPLVSIKILLHRAFSASFSVVNWLFIFTRFDS 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04300 502 Gene3D - 68 317 IPR015421 GO:0003824
Trre1g04300 502 Pfam Aminotransferase class-V 79 276 IPR000192 -
Trre1g04300 502 PANTHER L-CYSTEINE DESULFHYDRASE 25 436 - -
Trre1g04300 502 SUPERFAMILY PLP-dependent transferases 33 434 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04300 Trre-Chr1 48651179 48656180 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04300 K22207 - gmx:100796732 668.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04970 13 55839034 55842884 Trre1g04300 1 48651179 48656180 PCT