Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04970 ATGGCCTCCAACAACAACAACATCAATCACCACCGTTCAATCACTAACATCAACGGCTCACATCCAATCCCCAAAAAACCTAAACTCTCTTCTTCATCTTTCATAACCACTTCCGAAATTGAATCTGAATTCTCCCACCATGACACCACCGTCGCACGCATCAACAACGGCAGCTTCGGTTCCTGTCCATCTTCCATCCTCTCCGCTCAACAACAATGGCAGCTCAAATACCTCCGTCAACCAGATCAATTCTACTTCAACTATCTCAAACCAGCTATCAACAATTCTCGTTCAATTATCAAAGATTTAGTCAACGCTCAACACCTCGACGAAATTTCGATCGTCGATAACGCAACCACCGCTGCTGCTATTGTTCTTCAACACACCGCTTGGTGTTTCCGTGAAGGTAAATTCAATAAAGGTGATGTAGTTGTTATGCTTCATTATGCTTATGGTGCTGTTAAGAAATCTATGGAAGCTTACGTTACTCGTGCTGGTGGAAAAGTAATTGAAGTTCCTCTTCCTTTTCCGGTGAGTTCTAATGATGAGATTGTTACTGAATTTAGAAAAGCTTTGGAGAAAGGTAAAATGGATGGAAAAAAAATTAGGTTAGCTGTCATTGATCATGTTACTTCTATGCCTTGTGTTGTTATTCCTGTTAAGGAATTGATTCAAATTTGTAGAGAGGAAGGTGTTGAACAGGTTTTTGTTGATGCTGCTCATTCAATTGGATGTACTCATGTTGATATGCAAGAGATTGGTGCTGATTATTATACTAGTAATTTGCATAAGTGGTTTTTTTGTCCACCTTCCATTGCGTTTTTGTATACTAAGAAGAACCCTAAGAGTGATGGTAGTGATTTGCATCATCCTGTGGTGTCTCATGAGTATGGAAATGGATTGGCTGTGGAAAGTGCTTGGATTGGAACAAGGGATTATAGTGCTCAATTGGTGGTTCCAAATGCTTTGGAATTTGTCAATAGGTTTGAAGGTGGGATTGAAGGGATTAAGAAGAGGAATCATCAAGTTGTTGTTGAGATGGGAGAGATGTTGGTTAAGGCTTGGGGAACTCATCTTGGGAGTCCTGCACATATGTGTGCTAGTATGGTTATGGTTGGTTTGCCTACTTGTTTGGGGATTCGTAGCGATTCTGATGCACTCAAGTTTACAATAAAGTCGAGGATTATTACAAGTTTAGGGATGCTGTTAACCAACTTGTGGATAATGGGTTTGCTTGTACTCTTATTTCCGGTTGAAGAGTTGAGAAGTGTCAGTATCGTCTTTCTGATGAATAAAGCAATGGTTGTGATTGCTTGCTTGCTTGCAAGCTGTGCTAGTTGCAATGGTTTTGGTACCATGGACTGCATGTTTTGCAGTCATTATGCCAAGTTACCAACTGCTTCTTCAGGTTTATATCAAATTCTACCGGATACTTGA 1437 0.4036 MASNNNNINHHRSITNINGSHPIPKKPKLSSSSFITTSEIESEFSHHDTTVARINNGSFGSCPSSILSAQQQWQLKYLRQPDQFYFNYLKPAINNSRSIIKDLVNAQHLDEISIVDNATTAAAIVLQHTAWCFREGKFNKGDVVVMLHYAYGAVKKSMEAYVTRAGGKVIEVPLPFPVSSNDEIVTEFRKALEKGKMDGKKIRLAVIDHVTSMPCVVIPVKELIQICREEGVEQVFVDAAHSIGCTHVDMQEIGADYYTSNLHKWFFCPPSIAFLYTKKNPKSDGSDLHHPVVSHEYGNGLAVESAWIGTRDYSAQLVVPNALEFVNRFEGGIEGIKKRNHQVVVEMGEMLVKAWGTHLGSPAHMCASMVMVGLPTCLGIRSDSDALKFTIKSRIITSLGMLLTNLWIMGLLVLLFPVEELRSVSIVFLMNKAMVVIACLLASCASCNGFGTMDCMFCSHYAKLPTASSGLYQILPDT 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04970 478 Pfam Aminotransferase class-V 91 371 IPR000192 -
Trre13g04970 478 Gene3D - 64 328 IPR015421 GO:0003824
Trre13g04970 478 SUPERFAMILY PLP-dependent transferases 48 402 IPR015424 -
Trre13g04970 478 MobiDBLite consensus disorder prediction 1 30 - -
Trre13g04970 478 PANTHER L-CYSTEINE DESULFHYDRASE 25 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04970 Trre-Chr13 55839034 55842884 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04970 K22207 - gmx:100786129 631.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04970 13 55839034 55842884 Trre13g04970 13 55839034 55842884 ECH
Trre13g04970 13 55839034 55842884 Trre1g04300 1 48651179 48656180 PCT