Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04294 ATGGCCATGGAAGCTTCTTTCAGCCTCTTGATTCTCTCTTCTCTCTTGATTTCATGTTCTGGAGTTTTGGTAGGTTTTTCCTATCATGAGAGAGGAGATACTTGGACATCATTAATCCAGCAGAGTAAAGTTTCTTCGTCTCAGATTCGAGTTTTCGTTACAGATCATAGGATTTTGAGCACTCTTACCAACTCAAATGTGTTAGTTGATCTCTACTTGAACAAAAGCCAAGTTGAAAATTTCATTACTTCAAAACCTTCAGCGATTTCCGAGCTAAAAGTTCAGCTTCTGAACTTTCTTCCACATTTAAACATCAAAAGCATCATTGCTAGCTGTGGAAGTGAGTGCTTAGTTCAAAATGAGATGCCTATGATTATGCATGCTCTTAAATCAATTCATTCAGTTCTCCGAGATCTTCACAAAGGTAACGAAGTAAAAGTCTCGATCGCATTTCCACTTCAATTCTTAAGGAAGTTGAGTGCATCACAAGAACACAAACTTCGTAGGCTACTTTCGTTTATGAAGGAAACAAAATCGTTTGTGACGATAGAAGACAGCATTGATGGGGAATTAAGCATGGGAGAACATTTTGTTCAAACTATTATCGAACGAGCCGCTCTTGCTGCTTCTGTTCTTCCTTGCAATGATGTTCCTGTGGTGCTAACAATCAAGAGTTCGATTATACCAAGTTTGATAGAAGTAGCTCAATTTAGTAAAAGAGTATCCAAATATTTAGAAGCAAGAAGTCCTATTGCAAAAAGACTATCTGCATTATATGTAGAACTTCATGCAACAGAAGATTTTTCAATGAAAGAGCTTAAAAGGGAAGAGGAAGAAATGTTTCCTTTGTCTAGAAGAGAGATCTTAAGCAAATTCCACAGAAGAAAAACTCTAGATGGCACAAACAGTCCAACAAACACAGTTTATCCAACAAATCCAACACCGGTTGTTGTGACACCCTCAGATACACCAACCATTATAGCAGTTCCTTCTTCCACCAATCCTGTCACAATTTCCCCTACAAATCCAGCTGCAATGCCAGTAACAGTTCCTTCTACCACACCTGCTGTTCCTTTACCTCCAACAAATCCAACCAATTCACCAGTTCCTGTCTTCAATCCAGCTACAACACCTTCGACGGTTCCAGGTACACAACCAGTAACCAACCCTGTGACATCTTATCCACCTCCATCGGGAAATGTTCCTGGCGTAAATCCTCAACAGCCACCTCCTTCAAGCACAAATGCTCCTTCCAGTCAAGGACAGAGTTGGTGTGTGGCGAAATCAGGTGCTCCACAAGCGACCATTCAATCAGCATTGGATTATGCTTGTGGAATGGGAGGTGCAGATTGTTCTCAAATACAGCAGGGTGCTAGCTGTTACAGTCCAGTCACTTTGCAGAACCATGCTTCTTTTGCCTTCAATAGTTACTATCAAAAGAATCCATCTCCAACAAGTTGCGACTTTGGAGGTGCTGCCACCTTAGTTAACTCAAATCCAAGTTCTGGTTCTTGTATTTTTCCATCATCATCTTCGTCGTCGTCATCATCATCATCATCCTCAACGCCACCAATGATATCATCGCCAACACCACCTACACAATCAATTCCAACTTCAACATCGCCGCCAAGTCTAACAACACCTCCATCAACTATTCCAACAATAGCTCCTCCATCAATTCCAACAGCTCCACCAACATCTTCTGGATCAGGCACTTTCGGCTATGGTGCCCCACCTTCAGTGTTAAATTCAAGCAACCCAGCTTCAGGTACAATGCCTGATTTTGGATCCGATAGCCCTCCTGTTGTAAACACAACAACGGCCTCACACTCTCTAGCTCTAAAACCTTCTACTGGCTGCATAGTTCTGATGATTTCATTTGTCACTGCAAGACTCAGCATGCGCCCATAG 1911 0.4181 MAMEASFSLLILSSLLISCSGVLVGFSYHERGDTWTSLIQQSKVSSSQIRVFVTDHRILSTLTNSNVLVDLYLNKSQVENFITSKPSAISELKVQLLNFLPHLNIKSIIASCGSECLVQNEMPMIMHALKSIHSVLRDLHKGNEVKVSIAFPLQFLRKLSASQEHKLRRLLSFMKETKSFVTIEDSIDGELSMGEHFVQTIIERAALAASVLPCNDVPVVLTIKSSIIPSLIEVAQFSKRVSKYLEARSPIAKRLSALYVELHATEDFSMKELKREEEEMFPLSRREILSKFHRRKTLDGTNSPTNTVYPTNPTPVVVTPSDTPTIIAVPSSTNPVTISPTNPAAMPVTVPSTTPAVPLPPTNPTNSPVPVFNPATTPSTVPGTQPVTNPVTSYPPPSGNVPGVNPQQPPPSSTNAPSSQGQSWCVAKSGAPQATIQSALDYACGMGGADCSQIQQGASCYSPVTLQNHASFAFNSYYQKNPSPTSCDFGGAATLVNSNPSSGSCIFPSSSSSSSSSSSSSTPPMISSPTPPTQSIPTSTSPPSLTTPPSTIPTIAPPSIPTAPPTSSGSGTFGYGAPPSVLNSSNPASGTMPDFGSDSPPVVNTTTASHSLALKPSTGCIVLMISFVTARLSMRP 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04294 636 MobiDBLite consensus disorder prediction 351 424 - -
Trre1g04294 636 MobiDBLite consensus disorder prediction 525 564 - -
Trre1g04294 636 FunFam Glucan endo-1,3-beta-glucosidase 4 418 511 - -
Trre1g04294 636 MobiDBLite consensus disorder prediction 506 602 - -
Trre1g04294 636 MobiDBLite consensus disorder prediction 353 368 - -
Trre1g04294 636 Gene3D - 418 522 - -
Trre1g04294 636 MobiDBLite consensus disorder prediction 389 413 - -
Trre1g04294 636 Gene3D Glycosidases 24 186 - -
Trre1g04294 636 MobiDBLite consensus disorder prediction 506 524 - -
Trre1g04294 636 MobiDBLite consensus disorder prediction 565 602 - -
Trre1g04294 636 Pfam X8 domain 424 494 IPR012946 -
Trre1g04294 636 MobiDBLite consensus disorder prediction 369 388 - -
Trre1g04294 636 SMART X8_cls 423 507 IPR012946 -
Trre1g04294 636 PANTHER BETA-1,3 GLUCANASE 371 515 IPR044788 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04294 Trre-Chr1 48587460 48589637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04294 386 510 Glycoside Hydrolase AT2G05790 48.062 1.36e-29 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04294 - - tpra:123886415 796.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g04294 1 48587460 48589637 Trre1g04294 1 48587460 48589637 ECH
Trre13g04974 13 55877721 55879701 Trre1g04294 1 48587460 48589637 PCT